Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0902 ATGGCTTCGGATCCGAAAGTTCATGAATTTGAAGAAGTGGCAAAGCATAACAAAACCAAAGATTGTTGGCTTGTTATTTCTGGAAAGGTATATGATGTTACGCCTTTTATGGACGATCATCCCGGAGGTGATGAAGTGTTATTATCTGCAACCGGAAAAGACGCTACCAACGATTTCGAAGATGTTGGCCACAGCGATGCAGCGAGAGAAATGATGGACAAATATTGCATCGGAGAAATCGATCCTACGACAGTTCCTTTGAAAAAGAAGTACGTTGTACCACAAACAGCCCAGTACAACCCGGATAAGACACCCGATTTTGTGATAAAGATATTGCAGATTCTGGTTCCTATATTGATTTTGGGTCTGGCATTTGCGGTTCGACAATACACCAAGAATGAGTAA 405 41.73 MASDPKVHEFEEVAKHNKTKDCWLVISGKVYDVTPFMDDHPGGDEVLLSATGKDATNDFEDVGHSDAAREMMDKYCIGEIDPTTVPLKKKYVVPQTAQYNPDKTPDFVIKILQILVPILILGLAFAVRQYTKNE 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7492597 7494218 + evm.model.ptg000001l.902 HCH5g0902 545054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0902 134 PANTHER CYTOCHROME B5 5 132 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
HCH5g0902 134 SMART Cyt_b5_2 8 81 IPR001199 -
HCH5g0902 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
HCH5g0902 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 89 IPR036400 -
HCH5g0902 134 Gene3D - 1 85 IPR036400 -
HCH5g0902 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
HCH5g0902 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
HCH5g0902 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
HCH5g0902 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
HCH5g0902 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
HCH5g0902 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 80 IPR001199 -
HCH5g0902 134 FunFam Cytochrome b5 type B 2 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1030 HCH-Chr13:29839090 HCH5g0902 HCH-Chr5:7492597 2.40E-29 dispersed
HCH4g0156 HCH-Chr4:866807 HCH5g0902 HCH-Chr5:7492597 3.20E-25 dispersed
HCH5g0187 HCH-Chr5:1065721 HCH5g0902 HCH-Chr5:7492597 6.70E-43 dispersed
HCH5g0902 HCH-Chr5:7492597 HCH7g1423 HCH-Chr7:46974718 7.70E-47 dispersed
HCH12g0503 HCH-Chr12:2951231 HCH5g0902 HCH-Chr5:7492597 2.50E-09 transposed
HCH5g0902 HCH-Chr5:7492597 HCH7g1737 HCH-Chr7:49083367 2.40E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0902 K23490 - csv:101207109 246.128