Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0915 ATGGGAGAAGAAGTGATGGTCAGCTGTGAGAATAATAATAATAATAATAATATGAATGTCAGAGAAGATATGGAGAAAGATAATTTGAAGATGATGATGAAAATGGCAGCAGAAGAAGCAGAAAGTATGGAAGAGACAGAGACAGAGACAGAGACTGGAAATGGATATGGTGTTGGTGTTGGTGTTGGAATTAAATGGGAGAGATTTTTGCCAAATATGATGTTAAGGGTTTTACTGGTTGAAGCTGATGATTCCACTAGACAGATTATAGCTGCCCTTCTTAGGAAGTGCAGTTACAAAGTTGCTGCTGTGCCTGATGGTTTAAAGGCATGGGAGATTCTCAAAGAAAGACCTCATAATGTGGACCTCATTTTGGCAGAAGTGGATTTGCCATCAATTTCTGGATTTGCCCTTCTCTCACTGATTATGGAACATGAGATTTGCAAAAAGATTCCTGTTATAATGATGTCATCCCAAGATTCAATTAGCACTGTTTATAAATGCATGATGAAAGGTGCTGCAGACTACCTTGTCAAGCCTTTGAGGAGAAATGAACTGAGAAATCTGTGGCAACATGTTTGGAGAAGACGAGCGTCAGCTAACATGAGAAATGGCCTTCAAGATGAGAGTGTTGAAGAAAAGATCGAAGTCACTTCAGAAAATGAGACTTCAAGTAATCGCTCGATTGGTTATGTTGCCAGAGTTCAAAGGAATAACAAAAACGTTGAGAAAGGGAGTGATGCTCAGAGCTCTTGTACAAAGGTGAATTTCGAAGTTGGAAGTATTTACCATAGAGAGATGCAGGACAGTTTGCAGCCCAGGCAGGGAAATGCCTTGCTGAATGAATTGAAGTTACAGAAAGACGAACCTCACACGAATTTGAATCAGAGATTGGTTATGAACGAAAATGACGCTGGAGGATTGACAATGGGCTGCTATGTGAATGCTGATCTACCAATCACATTAAGCATGGGTCTTGAGCCGAACAACGATAGGTCGAGTCCTAATATCGTTAATGAAGTGTGTGATAATAATAATTTGCTCACCAACCCTGCCAGAAATGCAACTGCGTTCGATCATGGGCGTACTAAGTATCCAGAATACAATCAAAGAAGTTCTCCTTCCACTGATGCCACAAATAATTTTAATTCTGCTCTACATTTGGATCTTTCCCTAAGAAGATGTTATGGTAATGATTTTGAGGGTTCTGGTGCAGAAGGTCGGGTTACCCTCAGACAATCTAGTGCTTCAGCTTTTACACGGTACACTTGCAGGCCTTTGCAAACACTTGAACCAAAATCAAGCAGTATCTGTGATCAACAAAAGGAATATGGAAGTAATCCTGAACAGAGTGTGTTAAGAATTATTGCTACTTCTTCTACCTCTGATACCCTTGACCCCATTCCAAGTCAGCAAAAGTGTAATGCATCTTTACCTCTGATCACCAGTCAATCTAATCACTCCGAAACCGCAAAATCATGTCGTCCTGAGAGGGGAATCCCGGTTCCAGTTTCATCGAAAGATTTGAGGTTTAATAATCAATTCTCAGGCTATGGCTCTCTACTTTCTCCAAACTTTTGCATGCAGCCGAGTCCCTCACCTTCTCCAAGCCCGACTTTAATCACTCATCCCGAACCCATCTCAGAAAAAAACACATTTTATCCCTTAAACATGGAAAACCATAATTTGGAGCAGCTTTTTATGCAACAGCATCGTGTTATGAACAATGCCACAAACCAAAGGATAGAAAATCTGGGGCAGAAATTGGATTCTTTGGAACATCAAGGCTATACATCTCCTCCAACCGATCACAGCACAAACAGTAGTCTATGTGGTGGTAATGCAACTCATTTTCATAATGTGGGATATACTAGCACCTGTGGAAGCAATAGCAATGTAGATCAAGTTGGTATTGCCATGGTTGCACCAGAGAGCAAGAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGATTCTCATCGGTCCAGTCAAAGAGAAGCGGCTCTAACAAAGTTCCGTATGAAACGCAAAGATAGATGTTTTGATAAAAAGGTTCGGTATGAGAGCAGGAAAAAACTGGCAGAGCAGCGTCCTAGAGTAAAAGGACAGTTCGTCCGTAGAGTATAA 2124 40.87 MGEEVMVSCENNNNNNNMNVREDMEKDNLKMMMKMAAEEAESMEETETETETGNGYGVGVGVGIKWERFLPNMMLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKERPHNVDLILAEVDLPSISGFALLSLIMEHEICKKIPVIMMSSQDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRRASANMRNGLQDESVEEKIEVTSENETSSNRSIGYVARVQRNNKNVEKGSDAQSSCTKVNFEVGSIYHREMQDSLQPRQGNALLNELKLQKDEPHTNLNQRLVMNENDAGGLTMGCYVNADLPITLSMGLEPNNDRSSPNIVNEVCDNNNLLTNPARNATAFDHGRTKYPEYNQRSSPSTDATNNFNSALHLDLSLRRCYGNDFEGSGAEGRVTLRQSSASAFTRYTCRPLQTLEPKSSSICDQQKEYGSNPEQSVLRIIATSSTSDTLDPIPSQQKCNASLPLITSQSNHSETAKSCRPERGIPVPVSSKDLRFNNQFSGYGSLLSPNFCMQPSPSPSPSPTLITHPEPISEKNTFYPLNMENHNLEQLFMQQHRVMNNATNQRIENLGQKLDSLEHQGYTSPPTDHSTNSSLCGGNATHFHNVGYTSTCGSNSNVDQVGIAMVAPESKNEEALFSQGGDSHRSSQREAALTKFRMKRKDRCFDKKVRYESRKKLAEQRPRVKGQFVRRV 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7604631 7609081 + evm.model.ptg000001l.915 HCH5g0915 545067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0915 707 Pfam CCT motif 664 706 IPR010402 GO:0005515(InterPro)
HCH5g0915 707 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 269 IPR045279 GO:0009736(InterPro)
HCH5g0915 707 ProSiteProfiles Response regulatory domain profile. 76 194 IPR001789 GO:0000160(InterPro)
HCH5g0915 707 MobiDBLite consensus disorder prediction 1 20 - -
HCH5g0915 707 Coils Coil 575 595 - -
HCH5g0915 707 Coils Coil 26 46 - -
HCH5g0915 707 ProSiteProfiles CCT domain profile. 664 706 IPR010402 GO:0005515(InterPro)
HCH5g0915 707 SMART REC_2 75 190 IPR001789 GO:0000160(InterPro)
HCH5g0915 707 Gene3D - 73 307 - -
HCH5g0915 707 SUPERFAMILY CheY-like 69 199 IPR011006 -
HCH5g0915 707 CDD psREC_PRR 77 180 - -
HCH5g0915 707 Pfam Response regulator receiver domain 77 188 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0915 HCH-Chr5:7604631 HCH9g0616 HCH-Chr9:4110505 3.00E-57 dispersed
HCH5g0915 HCH-Chr5:7604631 HCH3g0080 HCH-Chr3:455789 1.70E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33638 PF00072 Response_reg 2.60E-21 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0915 K12130 - csv:101209788 853.203