Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0949 ATGGCTTCCGCTACCAGTCTTGTAGTTGGATCTTTTGTTTGGTTGGAGGATTCCGAAGAAGCTTGGATAGAAGGTGAAGTTTTAGAAATTAAAGGTGAAGAAATTAAGGTACTCTGCACCTCAGGGAAAACGGTTGTAGTTAAAGCAACTAATGTCTATCCTAAAGATTTAGAAGTTCCCCCTTGTGGGGTGGATGACATGACCAAGTTGGCTTACTTGCATGAACCAGGGGTGCTGCAGAATTTAAAACTAAGATATGATATCAATGAAATATATACTTATACAGGGAATATATTGATTGCTGTGAACCCTTTTACAAAATTACCTCATCTCTATGATAGCTATATGATGGCACAATATAAAGGGGCAGCTTTTGGTGAGCTAAGTCCACATCCATTTGCAGTTGCAGATGCTGCCTACAGACTTATGATGAATGAAAAAAAGAGTCAATCAATATTGGTTAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACTAAATTGCTTATGCGGTATCTTGCTTATATGGGAGGGAGAGTTGAAGCTGAGGGGAGGACTGTTGAGCAGCAAGTTCTTGAGTCAAATCCCGTCTTAGAAGCATTTGGGAATGCGAAGACTGTTCGGAACAACAACTCCAGTCGGTTCGGTAAGTTTGTGGAGATTCAGTTTGACCAACATGGAAAAATATCAGGAGCTGCTATCAGAACTTATTTGCTGGAAAGATCACGTGTTTGTCAGGTGTCGGATCCAGAGAGAAATTATCACTGCTTCTACATGCTTTGTGCTGCACCACCTGAGGATATCAAGAAGTTTAAATTGGGTAACCCAAGAACGTTTCATTATCTAAATCAATCAAATTGCTATGAGTTGGATGAAATTGATGACGCCAAGGAATACATTGCAACACGAAGAGCAATGGAAGTTGTTGGGATAAGTTCTGATGAACAGGATGGAATATTTTGTGTTGTGGCTGCAATTTTACATCTGGGAAACATTGAATTTGCAAAAGGGAAGGAGGCTGATTCTTCTGTTCCAAAAGATGAAAAATCTTGGTTCCATCTTAGAACTGCTGCTGAGCTTCTCATGTGTGATGAAAAGGCTCTGGAGGATTCTCTTTGCAAACGTGTGATCGTCACTCGAGACGAAACCATCACAAAGTGGTTGGATCCAATTGCTGCAGTTCTTAGCAGGGATGCCCTGGCAAAAGTTGTTTACTCAAGATTATTTGATTGGCTTGTGGATAAGATTAATAATTCAATTGGCCAAGACCCTAACTCAAATTTCTTGATTGGAGTCCTGGATATCTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGCATCAATTTAACAAACGAGAAACTCCAACAACATTTTAATCAGCATGTCTTCAAGATGGAGCAAGAAGAGTATACAAAAGAGGAAATTGATTGGAGTTATATCGATTTTGTTGATAATCAAGACATCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATCGCACTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCACAAAAGTTGTATCAGACATTCAAAAATCATAAACGCTTCAGCAAACCAAAATTATCCCGGAGTGATTTCACAATTCTTCATTATGCTGGTGATGTCACCTATCAAACCGATTTATTTCTGGACAAAAATAAAGACTATGTTGTTGCTGAACATCAAGCACTATTGAGTGCTTCTAAATGCTTCTTTGTGTCGGGTTTGTTTCCTCTAGTAGCTGAAGAATCAGCCAAATCATCAAAATTCTCTTCAATAGGTTCTCGTTTCAAGCAACAATTGCAACAATTGCTGGAAACTCTTAGTGCTACTGAGCCACTTTACATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTAGAATCTTTGAGAATAAAAATATTTTACAACAACTACGATGTGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTATCCAACGAGGAAAACATTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCTGAAGTTCTGGATGGGAGTTCTGATGAAGTGATGGCTTGTAAGAGGCTTCTAGAGAAGGTTGGACTTAAAGGATATCAGATTGGTAAGACAAAGGTGTTTCTCCGAGCTGGTCAGATGGCTGATCTTGATGGGCTGAGGGCTGAGGTCTTGGGGAGATCAGCAAGCATTATTCAGCGGAAAGTCCGCTCTTATTTGGCCCGTAGAAGTTTTATTACGCTTCGTAGGTCAGCTGTACAACTGCAATCTGCATGTAGAGGACAACTTTCTAGACAAGTATTTGAGGGCATGAGGCGAGAAGCTTCTTCTCTAATGATTCAGAGGAACTTGCGCATGTATCTATGTAGGAAAGCTTACAAACAAAAGCATTCTTCAGCCGTTTCTATTCAAACTGGAATGCGTGGGATGGCTGCACGTAATGAATTACGCTTTAGAAGGCAGACCAAAGCTGCTATTATTATCCAGAGCCACTGTCGCAAATATTTGGCTCAGTTACACTACAAGAAGACAAAGAAAGCAACAATCAGTATCCAGTGTGCATGGCGAGGAAGAGTTGCTCGTAAGGAATTGCGGAAGCTTAAGATGGCTGCAAAGGAAACGGGAGCTCTCCAAGCTGCCAAAAATAAATTGGAAAAGCAAGTCGAAGAGTTAACATGGAGATTGCAGTTGGAGAAACGCATGCGGGCTGACTTGGAAGAAGCTAAAACACAAGAAAATGAAAAGCTACAATCTGCTTTGAAAGAAATGCAGCTTCAGTTGAAAGAAACTAAAGTAATGTTTGAGAAGGAACGTGAAGCAGCAAAAGAGGCTTCAAATATTATTCCTGTTGTGAAGGAAGTTCCAGTTGTTGATAATGCAATGCTTGAGAAAATTACCAGTGAAAATGAAAAGCTCAAGGCTTTGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAGAAAAAATATGAGGAGGCAAACAAAGTCAGTGAAGAGAGGTTGAAGCAAGCCTCAGAGGCGGAAACAAAGATAATTCAGTTAAAGACTGCAATGAACAGGCTTGAAGAAAAATTCTCAAATATTGAATCTGAAAATCAGATTCTTCGGCAGCAGGCCTTCCTGAAACCACCAGTAAAAAAGAATCCTGATCATTTACCTACACCAACACCAGTGCCAGAGAGATTGGAAAATGGTAACCATCTGAGTGAAGATAACAAAATCAATGATCAGTTTGTGACACCCGTGAAGACACTGAAGAGAATAAGCTCAGAATCTGAAATTAAATTGAGTAGATCTCATTTTGAACATCAACAGGAAAATGTTGATGCTCTTATAAGTTGCGTCATGAATAACATTGGGTTTAGTAATGGTAAGCCCATAGCTGCGTTTACCATTTATAAATCCCTTCTTCACTGGAAATCTTTTGAGGCTGAAAAGACTAGTGTATTCGATCGTCTAATTCAGATGATTGGATCTGCAATAGAGAATCAAGATAACAATGATCATATGGCTTATTGGCTATCAAACACGTCTGCACTACTATTCTTGCTTCAACGAAGCTTAAAAGCTGCTGGTGCTCCCCGAAAACCACCTCCTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTCCGTTCGTCCCCTTCTTCCAACAGTCTCTCTGGACTTAAGGTGGTACGCCAAGTGGAGGCTAAATACCCAGCTTTGCTATTCAAGCAGCAGTTGACAGCTTATGTGGAGAAAATATTCGGAATTATTCGGGATAACTTGAAGAAGGAGTTGACATCATTGCTTTCCATGTGTATCCAAGTACCAAGAACATCAAAAGGGTTGTTAAGGTCTGGGAGATCATTTGGTAGAGATTCTCAAACTAATTACTGGCAGAACATCATAGAGGGTCTCAACATTCTTCTTTGCACATTGAAAGAAAATTTCGTTCCACAAATACTTATCCAGAAGATCTTCACTCAAAATTTCTCATATATCAACGTTCAACTCTTTAATAGCCTTCTTCTCCGCCGAGAATGCTGTACATTCAGCAACGGGGAATACGTAAAATCCGGGTTAGCTGAGTTGGAACTCTGGTGTTGCCAAGCAAAAGACCAGTATGCTGGTTCTTCCTGGGATGAACTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCCTATGATGAAATCACCAACGATCTTTGCCCGATCTTGAGTGTCCAGCAACTATATAGAATATGTACACTGTACTGGGATGACAACTATAATACTAGAAGTGTATCTCCAGCTGTAATATCTAGCATGAGAGTACTCATGACTGAGGACTCCAACAATGCAGTTAGCAGTTCCTTCCTGTTGGATGACAATTCCAGCATTCCGTTCTCGGTTGAAGACCTCTCGAATTCTCTGGAAGAGAGAGACTTCTCTGGTGTCACACCTGCAGATGAATTACTTGAGAATCCAGCCTTCCAGTTTTTACAAGAGTGA 4530 40.13 MASATSLVVGSFVWLEDSEEAWIEGEVLEIKGEEIKVLCTSGKTVVVKATNVYPKDLEVPPCGVDDMTKLAYLHEPGVLQNLKLRYDINEIYTYTGNILIAVNPFTKLPHLYDSYMMAQYKGAAFGELSPHPFAVADAAYRLMMNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRVEAEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQHGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDIKKFKLGNPRTFHYLNQSNCYELDEIDDAKEYIATRRAMEVVGISSDEQDGIFCVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELLMCDEKALEDSLCKRVIVTRDETITKWLDPIAAVLSRDALAKVVYSRLFDWLVDKINNSIGQDPNSNFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTILHYAGDVTYQTDLFLDKNKDYVVAEHQALLSASKCFFVSGLFPLVAEESAKSSKFSSIGSRFKQQLQQLLETLSATEPLYIRCVKPNNLLKPRIFENKNILQQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGLLAPEVLDGSSDEVMACKRLLEKVGLKGYQIGKTKVFLRAGQMADLDGLRAEVLGRSASIIQRKVRSYLARRSFITLRRSAVQLQSACRGQLSRQVFEGMRREASSLMIQRNLRMYLCRKAYKQKHSSAVSIQTGMRGMAARNELRFRRQTKAAIIIQSHCRKYLAQLHYKKTKKATISIQCAWRGRVARKELRKLKMAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALKEMQLQLKETKVMFEKEREAAKEASNIIPVVKEVPVVDNAMLEKITSENEKLKALVSSLEKKIDETEKKYEEANKVSEERLKQASEAETKIIQLKTAMNRLEEKFSNIESENQILRQQAFLKPPVKKNPDHLPTPTPVPERLENGNHLSEDNKINDQFVTPVKTLKRISSESEIKLSRSHFEHQQENVDALISCVMNNIGFSNGKPIAAFTIYKSLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHMAYWLSNTSALLFLLQRSLKAAGAPRKPPPSTSLFGRMTMGFRSSPSSNSLSGLKVVRQVEAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSMCIQVPRTSKGLLRSGRSFGRDSQTNYWQNIIEGLNILLCTLKENFVPQILIQKIFTQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKDQYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPAVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLEERDFSGVTPADELLENPAFQFLQE 1509
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 8205255 8223353 + evm.model.ptg000001l.949 HCH5g0949 545101
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0949 1509 SMART iq_5 757 779 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 SMART iq_5 853 875 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 SMART iq_5 805 827 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 SMART iq_5 782 804 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 SMART iq_5 830 852 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 SMART iq_5 734 756 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 ProSiteProfiles IQ motif profile. 758 787 - -
HCH5g0949 1509 ProSiteProfiles IQ motif profile. 737 764 - -
HCH5g0949 1509 SMART MYSc_2a 57 733 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 SMART DIL_2 1330 1437 IPR002710 -
HCH5g0949 1509 FunFam unconventional myosin-Va 834 881 - -
HCH5g0949 1509 Gene3D - 785 833 - -
HCH5g0949 1509 Gene3D - 834 882 - -
HCH5g0949 1509 Gene3D - 735 784 - -
HCH5g0949 1509 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
HCH5g0949 1509 PANTHER MYOSIN 13 1454 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
HCH5g0949 1509 Gene3D - 252 310 - -
HCH5g0949 1509 Gene3D - 439 623 - -
HCH5g0949 1509 ProSiteProfiles IQ motif profile. 854 883 - -
HCH5g0949 1509 MobiDBLite consensus disorder prediction 1052 1081 - -
HCH5g0949 1509 FunFam Myosin heavy chain 252 307 - -
HCH5g0949 1509 FunFam Class V myosin 439 583 - -
HCH5g0949 1509 Pfam Myosin N-terminal SH3-like domain 10 51 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 Gene3D - 667 731 - -
HCH5g0949 1509 Gene3D Kinesin motor domain 65 662 IPR036961 -
HCH5g0949 1509 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 Pfam DIL domain 1330 1435 IPR002710 -
HCH5g0949 1509 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 CDD MyosinXI_CBD 1112 1478 IPR037975 GO:0007015(InterPro)
HCH5g0949 1509 ProSiteProfiles IQ motif profile. 806 835 - -
HCH5g0949 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 785 IPR027417 -
HCH5g0949 1509 ProSiteProfiles Dilute domain profile. 1161 1455 IPR002710 -
HCH5g0949 1509 ProSiteProfiles IQ motif profile. 783 812 - -
HCH5g0949 1509 ProSiteProfiles IQ motif profile. 831 860 - -
HCH5g0949 1509 CDD MYSc_Myo11 76 720 IPR036018 -
HCH5g0949 1509 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH5g0949 1509 Pfam IQ calmodulin-binding motif 786 804 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515(InterPro)
HCH5g0949 1509 FunFam Myosin XI D 735 784 - -
HCH5g0949 1509 Coils Coil 972 1048 - -
HCH5g0949 1509 FunFam Myosin 2 312 427 - -
HCH5g0949 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
HCH5g0949 1509 FunFam unconventional myosin-Va 785 833 - -
HCH5g0949 1509 Coils Coil 877 950 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1240 HCH-Chr4:8457370 HCH5g0949 HCH-Chr5:8205255 0.00E+00 dispersed
HCH5g0949 HCH-Chr5:8205255 HCH7g1382 HCH-Chr7:46587930 0.00E+00 dispersed
HCH5g0949 HCH-Chr5:8205255 HCH8g0621 HCH-Chr8:42990089 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0949 K10357 - csv:101208630 2712.56