Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0978 ATGGCATTTCCAAACCTTTTCTCTCTCTCCATTTCCTTCTTCTTCTTCTTCTTCTTACTGACCAAAACCCCAGTAGTAAAAGCTGAGTCTTTATATTCCTCAACTGATGTCCAGCTTCTTTTGGGAAATATCAAAGCTTCACTTGAAGGTGAAACTCAAAACTTGCTTTTATCTTCATGGAATCTTTCATTACCTCTTTGCCAATGGAGGGGGGTTAAATGGGTCTTTTCCAATGGAACTCATTTGCTTTGTACTGATTCCACCACTCCACAATGGTCTAATCTCACTCTTTTCAAAGACCCTTCTCTTCATATTCTCTCTTTGCAACTTCCTTCTGCTAATCTCACCGGTTCACTTCCTAAGGAGCTTGGTGAGTTTACTATGCTTCAAAGCCTTTACCTCAGTATCAATTCATTAACTGGAACTATTCCTCTTGAGCTTGGTTATAGCTCCTCTCTTTCTTATATTGATTTAAGTGGTAATTTGTTGATTGGAGCTTTTCCTCCATCTTTATGGAATCTTTGTGATAAACTTGTTTCTATTAGACTTCATGGTAATTCATTAACTGGGTCTTTACCTGATCCTGCTTTACCAAACTCTACTTGCAAGATGTTGGAGGCTTTGGATTTGGGTGAGAATAAGATTTCAGGTACTTTCCCTGAATTTGTAACTAGATTTCAGGGTCTGAAAGAGCTTAATTTTGGGAATAATATGATGTTTGGATCCATTCCACAGAGCTTGGGTGAGTTGGAACTTGAAAAGTTGAACCTTTCAAACAATAATTTTAGTGGAATGTTGCCTCCTGTTTTTGGTAACTCAAAGTTTGGTGCCGAAGCTTTTGAAGGGAATAGTCCTCAGCTTTGTGGGTTGCCTTTGAAAAGCTGTGCTGGAACTTCTAGATTGAGTTCTGGTGCTATTGCTGGGATTGTTATTGGCTTGATGACCGGGACGGTGGTTTTGGCATCATTGTTAATTGGTTATTTGCAAAACAAGAAGAAGAAGAGTAGGAATGAGAGTGAAGATGAGATTGAGGAAGGAGAAGAGGACGAAAATGGCGGCGGCGGTATCGGTGGCACGAGCGGTGAGGGGAAGCTCATTTTATTTCAGGGCGGCGAGCATTTGATGTTAGAAGATGTATTGAATGCTACCGGGCAGGTTATGGAAAAAACAAGCTATGGCACTATTTATAAGGCAAAGCTTGCTGATGGAGGTACCATTGCTCTAAGATTGCTGAGGGAAGGTAGTTGCAGAGATAGAAGTTCTTGTTTGCCAGTGATTAAACAGTTGGGAAAGATTCGTCATGAGAATTTGATTCCATTGAGAGCTTTCTATCAGGGAAAGAGAGGAGAGAAGCTCCTCATTTATGACTATCTGCCTATCAGAACTTTACATGATTTTCTACACGACACTAGAGCAGGAAAACCGGTGCTGAACTGGGCTCGAAGGCACAAGATTGCATTGGGCATCGCCCGGGGACTAGCCCATCTTCATACAGGTCTTGAGGTGCCCATTACACATGGTAATGTGAGATCGAAAAATGTGCTTGTGGACGACTTTTTTGTTGTGAGGCTGACAGAGTTTGGGCTCGACAAGCTAATGATCCCATCTGTAGCCGACGAAATTGTCTCTCACGCCAAGACTGATGGTTACAAGGCACCAGAACTTCAAAGGATGAAGAAATACAACTCCAGAACAGACGTATATGCATTTGGAATTCTGTTACTGGAAATTTTGATGGGCAAGAAGCCTGGAAAGAACGGGAGGAGCGGTGAGTTTGTCGATTTACCCTCAATGGTGAAAGTAGCAGTTTTAGAGGAGACAACAATGGAGGTTTTTGATGTGGAAGTTTTAAAGGGGATCAGAAGTCCCATGGAAGATGGATTGGTTCAGGCATTGAAGCTTGCAATGGGGTGTTGTGCTCCAGTGGCTTCAGTCAGACCTTCCATGGATGAAGTTGTGAAGCAGTTGGAAGAAAATAGACCAAGAAATAGATCTGCTTTATACAGTCCTACAGAAACAAGAAGTGAAATTGGTACCCCATTTTGA 2046 41.84 MAFPNLFSLSISFFFFFFLLTKTPVVKAESLYSSTDVQLLLGNIKASLEGETQNLLLSSWNLSLPLCQWRGVKWVFSNGTHLLCTDSTTPQWSNLTLFKDPSLHILSLQLPSANLTGSLPKELGEFTMLQSLYLSINSLTGTIPLELGYSSSLSYIDLSGNLLIGAFPPSLWNLCDKLVSIRLHGNSLTGSLPDPALPNSTCKMLEALDLGENKISGTFPEFVTRFQGLKELNFGNNMMFGSIPQSLGELELEKLNLSNNNFSGMLPPVFGNSKFGAEAFEGNSPQLCGLPLKSCAGTSRLSSGAIAGIVIGLMTGTVVLASLLIGYLQNKKKKSRNESEDEIEEGEEDENGGGGIGGTSGEGKLILFQGGEHLMLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCRDRSSCLPVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHDTRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFVVRLTEFGLDKLMIPSVADEIVSHAKTDGYKAPELQRMKKYNSRTDVYAFGILLLEILMGKKPGKNGRSGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9097866 9100836 + evm.model.ptg000001l.978 HCH5g0978 545130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0978 681 Pfam Leucine rich repeat 205 262 IPR001611 GO:0005515(InterPro)
HCH5g0978 681 Coils Coil 329 349 - -
HCH5g0978 681 Gene3D Transferase(Phosphotransferase) domain 1 459 674 - -
HCH5g0978 681 Pfam Protein tyrosine and serine/threonine kinase 385 656 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0978 681 Pfam Leucine Rich Repeat 129 148 IPR001611 GO:0005515(InterPro)
HCH5g0978 681 Pfam Leucine Rich Repeat 152 174 IPR001611 GO:0005515(InterPro)
HCH5g0978 681 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 97 192 - -
HCH5g0978 681 MobiDBLite consensus disorder prediction 335 357 - -
HCH5g0978 681 MobiDBLite consensus disorder prediction 662 681 - -
HCH5g0978 681 Gene3D Ribonuclease Inhibitor 37 177 IPR032675 -
HCH5g0978 681 FunFam Leucine-rich repeat receptor-like protein kinase 202 295 - -
HCH5g0978 681 SUPERFAMILY L domain-like 50 273 - -
HCH5g0978 681 Gene3D Phosphorylase Kinase; domain 1 369 457 - -
HCH5g0978 681 Gene3D Ribonuclease Inhibitor 178 297 IPR032675 -
HCH5g0978 681 ProSiteProfiles Protein kinase domain profile. 381 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0978 681 SUPERFAMILY Protein kinase-like (PK-like) 386 657 IPR011009 -
HCH5g0978 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 107 663 IPR052451 -
HCH5g0978 681 MobiDBLite consensus disorder prediction 661 681 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1045 HCH-Chr11:42036758 HCH5g0978 HCH-Chr5:9097866 5.30E-55 dispersed
HCH5g0668 HCH-Chr5:4834704 HCH5g0978 HCH-Chr5:9097866 2.60E-57 dispersed
HCH5g0805 HCH-Chr5:6230330 HCH5g0978 HCH-Chr5:9097866 1.30E-07 dispersed
HCH5g0978 HCH-Chr5:9097866 HCH3g0220 HCH-Chr3:1405698 1.30E-57 dispersed
HCH5g0978 HCH-Chr5:9097866 HCH11g0056 HCH-Chr11:956353 1.20E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81522 PF07714 PK_Tyr_Ser-Thr 2.40E-26 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0978 - - - 0.0