Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0986 ATGAGTTGCTTTCCATGTTTTTCATCTCAAACGAAAGCAACAAGAACAAAGAGTGGGAGAAGGGAACAACCACCTTCATTACCTCCTCAACATCATAAAGAACAAGTTCATCATCCTCCTTTGCCACGCCCTACAGAAAATCAAAAACCAAGAAGTTCTCCAGGTGAAACAACAAACCAAAAGGATGCACAGAAAGACATTGGAGAAAAGAATAATATTGCAGCTCAGACTTTTACTTTCAGAGAGCTGGCCACTGCTACAAAGAATTTCCGTCAAGAATGTCTTATTGGAGAAGGAGGGTTTGGGAGAGTTTACAAAGGGAAACTCGAGAAAACAGCCCAGGTTGTAGCAGTGAAACAGCTTGACAGAAATGGATTGCAAGGAAACAGAGAGTTTCTTGTGGAGGTTTTGATGCTCAGCTTATTACATCATTCAAATCTTGTCAATCTTATTGGCTACTGTGCGGATGGTGATCAAAGGCTGTTGGTCTATGAGTATATGCCTTTGGGATCTTTGGAAGATCATCTGCTAGAGATTCCAGCAGAGCAAAAGCCATTAGATTGGGGGACAAGAATAAAAGTAGGATTGGGAGCAGCAAAGGGTCTAGAGTATTTGCATGACAAAGCAAACCCACCAGTGATATATAGAGATTTGAAATCATCAAACATTCTTTTGGACAGTGCATTCAATCCAAAACTGTCTGATTTTGGTCTGGCAAAGCTTGGGCCAGTGGGGGACAAATCCCATGTTTCTTCAAGGGTTATGGGAACTTATGGATATTGTGCACCTGAATATCAAAGAACAGGACAACTCACTGTTAAATCTGATGTCTATAGTTTTGGTGTTGTTTTGTTGGAACTCATCACTGGAAGGAGAGTCATTGATAACACTAGACCAGCTGATGAGCAAAACTTGGTTGCTTGGGCATACCCAGTATTCAAAGAACCAAGTAGATTTTCAGAATTGGCGGATCCCCTTCTGGGTGGAGATTTCCCAGTGAGAGCACTGAACCAAGCGGTGGCCGTAGCCGCAATGTGCCTCCATGAGGAGCCATCGGTCCGGCCACTGATCAGCGACGTCGTAACCGCTCTCAGTTTCTTAGGCGCCGATGCCGTTAAGGCCTCAAAATCATCAGATGGTGTCTTTTCTTCACCTTTGTCTGATCCAAATCTCATCAGTTTGTCTAAATCCAATGGCTATATTCGAGACGGAGGTGGAGAAGAAGAAGACGACACAGTGAAGGAGCGCCAACGAGCAGTTGCAGAAGCCATAGAATGGGGTTCTTCCTCAAGGCAAAATGCCACTTCTTCACGCCCTGGAAGTGCTTCTTCCTTGTAA 1338 43.95 MSCFPCFSSQTKATRTKSGRREQPPSLPPQHHKEQVHHPPLPRPTENQKPRSSPGETTNQKDAQKDIGEKNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLEKTAQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHSNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLEIPAEQKPLDWGTRIKVGLGAAKGLEYLHDKANPPVIYRDLKSSNILLDSAFNPKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRVIDNTRPADEQNLVAWAYPVFKEPSRFSELADPLLGGDFPVRALNQAVAVAAMCLHEEPSVRPLISDVVTALSFLGADAVKASKSSDGVFSSPLSDPNLISLSKSNGYIRDGGGEEEDDTVKERQRAVAEAIEWGSSSRQNATSSRPGSASSL 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9436975 9440632 + evm.model.ptg000001l.986 HCH5g0986 545138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0986 445 MobiDBLite consensus disorder prediction 426 445 - -
HCH5g0986 445 Gene3D Transferase(Phosphotransferase) domain 1 167 381 - -
HCH5g0986 445 MobiDBLite consensus disorder prediction 26 40 - -
HCH5g0986 445 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524(InterPro)
HCH5g0986 445 SMART serkin_6 90 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0986 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0986 445 CDD STKc_IRAK 96 364 - -
HCH5g0986 445 Gene3D Phosphorylase Kinase; domain 1 59 166 - -
HCH5g0986 445 PANTHER OS07G0668900 PROTEIN 35 376 - -
HCH5g0986 445 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0986 445 MobiDBLite consensus disorder prediction 402 421 - -
HCH5g0986 445 MobiDBLite consensus disorder prediction 397 445 - -
HCH5g0986 445 MobiDBLite consensus disorder prediction 1 71 - -
HCH5g0986 445 FunFam Serine/threonine-protein kinase PBS1 167 380 - -
HCH5g0986 445 FunFam Serine/threonine-protein kinase PBS1 63 166 - -
HCH5g0986 445 SUPERFAMILY Protein kinase-like (PK-like) 76 375 IPR011009 -
HCH5g0986 445 Pfam Protein kinase domain 92 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0986 HCH-Chr5:9436975 HCH7g1120 HCH-Chr7:43960087 3.00E-140 dispersed
HCH5g0986 HCH-Chr5:9436975 HCH5g0994 HCH-Chr5:9687707 1.10E-61 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81523 PF00069 Pkinase 8.50E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0986 - - - 0.0