Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0994 ATGGACATGCAGCTCTTGTGGATTACTTTCTTCCTGTGCTGTGGATTTTGCTTTCTTGCTCTCAGTGATCCAGATGGTTTCCTGAGCTTATCTTGTGGTGGAACTACCAGCTACATTGACTCCTCCAACATCACATGGATTCCAGATACCGATTTTATCGGCTTGGGAAACTCATCGACGGTTAATTACGGTGAGGACAGCTCCTTTTCCAGTGCCCAAGTTCGATTCTTCCCCGATTCCCAAGGGCGAAAATGCTATAAACTGCCATTGAAAAATGGCTCATCATCAGTTCTCATTAGAGCTCAGTTTTTATACAAAAACTATGATAAGCTTGGGAAGCCGCCATCATTTTCGGTTTCTCTTGGGACAGCCATAACTAGCACTGTGAACCTTAGCACTCATGACCCCTGGATAGAGGAGTTTGTATGGCCAGTTAATAAAGAAACTGTTTCCTTCTGTTTGCATGCCATTCCTGAGGGTGGCATTCCTCTGATATATTCCCTTGAAGTTAGGCCACTTCCAAAGGAAGCTTACAAAGATGGCTTGCTTCCAAATCAGTCCCTTAGAAAGTGCTATAGAATCAACTGTGGTTACACCAATGGATCTCTGAGGTACCCTTTAGATTCACACGACCGAATCTGGGATTCCGACAGCTACTTCAAGCCCTTCCATGGGTCATCCGGGTTTAAAATTCAGCTTAGCTTTGATTCCTTGGGTGTCAAGGAATCTCCACCACCTGTAGTTCTTCAAACTGCAAGAGTTTTGACAAGAAGAGATGTTTTGACCTATAACTTACCACTTGCTGAAATGGGAGATTATTTTGTCATTCTTTATTTTGCTGGGATTCTACCTGTCTATCCTTCATTTGATGTGTTCATCAATGGGAAAATCATACAATCAAACTACACAGTAGAAGTATCAGAAATAAGTGCTCTATATGTCATTCAACAGCAAATAAAGGGCTTGAATATCACACTCAAGAGTGTCAAATTCTATCCTCAAGTCAATGCAATTGAGGTTTATGAGATTGTTAATGTTCCATTAGAAGCTTCATCAACCACAGTTTCTGCTCTCGAGGTAATTCACCAATCTACTGGTTTAGACCTTGGATGGGAAGATGATCCTTGCTCCCCAAAAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTGGAGCTTTCCAACATCAATTTGAGGTCAATCAGTCCAACATTTGGAGACATTCTGGATCTCAAAATACTGGATTTACACAACACTTCACTTGCAGGGGCAATACACAATTTGGGCAGCCTGATGCATCTTGAGAAATTAAACCTGAGTTTTAATCAGCTGACATCATTTGGTTCAGAGTTGGAGAATCTAATTAACCTTAAACTTTTGGATTTGCAGAACAATAGTCTGCAGGGAACAGTTCCAGATAGCTTGGGAGAACTAGAGGACCTTCACCTCTTGAATTTGGAAAATAATAGGCTAGAAGGCACACTCCCATTGTCTTTGAACAAAGAAAGCCTGGAGATCAGAACATCAGGAAATTTGTGTCTTTCTTTCTCTACAATGACATGCAATGATGTGTCATCCAACCCAGTAATTGAAACACCCCAAGTCACTGTGGTTCCTGAGAAGAAGCACACAAGACACAATCATATGCCAATCATTCTTGGTGCAGTTGCAGGAGCTTTGCTAACACTTATAATTGTTACTCTTTCAGTACTATTGTTCATGAAGAAAAATTCTAAGAACAGCACTGAAATCACATATTCAGCAAAGGCAGCAATGGAGCTCAGAAACTGGAACTCAGCCAAAGTTTTTTCCTACAAAGAGATCAAAGCAGCTACAAACAACTTCAAGGAGGTGATTGGTAGGGGAAGTTTTGGATCTGTTTATCTTGGAAAGCTTCCTGAAGGCAAGTTTGTGGCTGTAAAAGTAAGATTTGATAAAAGCCAACTTGGTGCTGATTCATTTATCAATGAGGTTCATCTACTGTCTCAAATTCGTCATCAGAATCTCGTTTGTTTGGAAGGATTTTGTTACGAATCCAAGCAGCAAATACTTGTTTATGAGTATTTACCTGGTGGATCCTTGGCTGACCACCTTTATGGCAAGAACAGCAAAAGAGTTTCGCTAAGCTGGATTCGAAGACTTAAAATTGCTGTTGATGCAGCAAAAGGGCTGGACTATTTACACAATGGAAGTGAACCACGAATCATACACCGCGATGTCAAGTGCAGTAACATCCTTTTGGATATGGAAATGACTGCAAAAGTCTGTGACTTTGGCCTCTCTAAGCAACTAACACAGGCTGATGCAACTCATGTCACCACTGTTGTCAAGGGAACTGCTGGTTATCTTGATCCCGAATATTACTCCACCCAACAACTGACTGAAAAGAGTGATGTTTATAGTATGGGAGTTGTCCTGCTCGAACTTATTTGTGGAAGAGAGCCTCTGAGTCACTCAGGAACTCCAGATTCTTTCAACTTGGTGTTATGGGCAAAACCATACTTACAGGCAGGTGGATTTGAGATAGTTGATGAAGGCCTGAGGGGAGATTTTGATGTTGAAAGCATGAAAAGAGTAGCTCTTGTTGCTGTCAGGTGTGTTGAGAGAGATGCTTCTCAGAGACCTAATATAGCACAAGTCTTGGCTGAGCTCAAACAAGCTTATGACTTACAGATTGCTCATCTTGCTACTTTTGACCACTAA 2712 41.3 MDMQLLWITFFLCCGFCFLALSDPDGFLSLSCGGTTSYIDSSNITWIPDTDFIGLGNSSTVNYGEDSSFSSAQVRFFPDSQGRKCYKLPLKNGSSSVLIRAQFLYKNYDKLGKPPSFSVSLGTAITSTVNLSTHDPWIEEFVWPVNKETVSFCLHAIPEGGIPLIYSLEVRPLPKEAYKDGLLPNQSLRKCYRINCGYTNGSLRYPLDSHDRIWDSDSYFKPFHGSSGFKIQLSFDSLGVKESPPPVVLQTARVLTRRDVLTYNLPLAEMGDYFVILYFAGILPVYPSFDVFINGKIIQSNYTVEVSEISALYVIQQQIKGLNITLKSVKFYPQVNAIEVYEIVNVPLEASSTTVSALEVIHQSTGLDLGWEDDPCSPKTWDHVGCEGNLVTSLELSNINLRSISPTFGDILDLKILDLHNTSLAGAIHNLGSLMHLEKLNLSFNQLTSFGSELENLINLKLLDLQNNSLQGTVPDSLGELEDLHLLNLENNRLEGTLPLSLNKESLEIRTSGNLCLSFSTMTCNDVSSNPVIETPQVTVVPEKKHTRHNHMPIILGAVAGALLTLIIVTLSVLLFMKKNSKNSTEITYSAKAAMELRNWNSAKVFSYKEIKAATNNFKEVIGRGSFGSVYLGKLPEGKFVAVKVRFDKSQLGADSFINEVHLLSQIRHQNLVCLEGFCYESKQQILVYEYLPGGSLADHLYGKNSKRVSLSWIRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMTAKVCDFGLSKQLTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSMGVVLLELICGREPLSHSGTPDSFNLVLWAKPYLQAGGFEIVDEGLRGDFDVESMKRVALVAVRCVERDASQRPNIAQVLAELKQAYDLQIAHLATFDH 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9687707 9693551 + evm.model.ptg000001l.994 HCH5g0994 545146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0994 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0994 903 ProSitePatterns Protein kinases ATP-binding region signature. 622 644 IPR017441 GO:0005524(InterPro)
HCH5g0994 903 FunFam serine/threonine-protein kinase PBS1-like 584 691 - -
HCH5g0994 903 Pfam Protein kinase domain 618 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0994 903 SMART serkin_6 616 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0994 903 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 692 898 - -
HCH5g0994 903 ProSiteProfiles Protein kinase domain profile. 616 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0994 903 Pfam Malectin-like domain 30 343 IPR024788 -
HCH5g0994 903 Gene3D Phosphorylase Kinase; domain 1 577 691 - -
HCH5g0994 903 PANTHER OS07G0107800 PROTEIN-RELATED 453 890 - -
HCH5g0994 903 SUPERFAMILY Protein kinase-like (PK-like) 591 885 IPR011009 -
HCH5g0994 903 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515(InterPro)
HCH5g0994 903 CDD STKc_IRAK 622 889 - -
HCH5g0994 903 SUPERFAMILY L domain-like 358 504 - -
HCH5g0994 903 ProSiteProfiles Leucine-rich repeat profile. 436 458 IPR001611 GO:0005515(InterPro)
HCH5g0994 903 Gene3D - 189 344 - -
HCH5g0994 903 Gene3D Ribonuclease Inhibitor 355 511 IPR032675 -
HCH5g0994 903 Gene3D Transferase(Phosphotransferase) domain 1 692 899 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0994 HCH-Chr5:9687707 HCH6g0135 HCH-Chr6:1821728 3.30E-93 dispersed
HCH5g0986 HCH-Chr5:9436975 HCH5g0994 HCH-Chr5:9687707 1.10E-61 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81524 PF12819 Malectin_like 1.30E-54 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0994 - - - 0.0