Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g1009 | ATGGACTTCTTTTTCTACTCTATTTTATTAGTCACCTTCACTTCACTTTTTCTTTTCATTGTACTTATGTTCTTCAAAAACTCCAATACTTGTTATCAACACAATCTTCCTCGAGGAAAGATGGGACTTCCATTCATTGGTGAAAGCCTCCAATTTCTTAAATCATTCCGAAATGGTAATCCAGAAAAGTTCATATTCGAAAGAATGTCCAAATTCTGTCCCCAAATTTTTAAAACATCCTTACTTGGTGAGCCAACAATTGTGTTTTGTGGAATACAAGGGAACAAATTCTTGTTTTCCAATGAGAACAAGTTTGTCACAGCTTGGTGGCCCAACACAATGAACAAAATTTTCGCATACGACACTCATCAAAATCAAAATACTACCATTGAAGAGTCAAAGAAAATGAGAAAATTATTTCCAGATTTCTTAAACCTGGAGGCTTTTACGAGATATATAAGCATTATGGATTCAATAGCCCAAAATCACTTCAAAGAATGCTGGGAAGGAAAACAACAAGTCAATGTTTATCCTCTCTCTAAAAGATTTACTTTCCATGTGGCTTGTAGACTTTTCTTGAGCATGGAAGATACTGAGAATCTGACCAAATTTGGAGAGTCTTTTCGTGTATTGTCATCAGGTATCTTCTCTTTCCCTTTAGACTTACCAGGGACAAATTTTAACAAAGCAATTAAGGCTTCTAAAGTGATAAGAGAAGAAATTGTAAGCATCATAAAGCATAGAAAAATCGATCTTATAAAGAAGAAGGCTTCTCCTGTTCAAGATATTCTGTCCCATATGTTGCTAATGGTTGATGGGGAGGGACAACACATGACTGAGACAGATATTGCAAACAAGATTTTAGGTTTACTTATTGGTGGCCATGATACTGCAAGTACTGTCATTACGTTTGTCGTTTACTATCTTGCTGAGCATCCTGATATCTACGACCGAGTCTACATTGAGCAAATGGAGATCTCAAAATCAAAGAAGCATGGAGAGTTGCTGAATTGGGATGACATTCAGAAGATGAAATATTCATGGATGGTTGCTTGTGAAGTAATGCGGCTTCTTCCTCCTCTCCCGGGTTCATTTAGGATGGCCATTACTGACTTTCATTTTGCGGGTTTTTTCATTCCAAAGGGATGGAAGCTGTATTGGAGCGCATATGCAACACATAAGAACCCTGAATACTTTCTAGATCCAGAAACGTTTGATCCCTCAAGATTTGAAGGGAAGGGACCAATCCCATATAGCTATGTACCATTTGGAGGAGGACCAAGAATGTGCCCCGGAAAAGAGTATGCACGTTCAGAAATACTTGTTTTTATATATAATTTGGTGAAGAGATACAAATGGGAGAAGCTACTTCCCCACAATAAGATTTCATTGGATCCAATACCAGTCCCAATTGAAGGCTTACCCATACGCCTTTTTCCTCATCATCCATAA | 1452 | 37.53 | MDFFFYSILLVTFTSLFLFIVLMFFKNSNTCYQHNLPRGKMGLPFIGESLQFLKSFRNGNPEKFIFERMSKFCPQIFKTSLLGEPTIVFCGIQGNKFLFSNENKFVTAWWPNTMNKIFAYDTHQNQNTTIEESKKMRKLFPDFLNLEAFTRYISIMDSIAQNHFKECWEGKQQVNVYPLSKRFTFHVACRLFLSMEDTENLTKFGESFRVLSSGIFSFPLDLPGTNFNKAIKASKVIREEIVSIIKHRKIDLIKKKASPVQDILSHMLLMVDGEGQHMTETDIANKILGLLIGGHDTASTVITFVVYYLAEHPDIYDRVYIEQMEISKSKKHGELLNWDDIQKMKYSWMVACEVMRLLPPLPGSFRMAITDFHFAGFFIPKGWKLYWSAYATHKNPEYFLDPETFDPSRFEGKGPIPYSYVPFGGGPRMCPGKEYARSEILVFIYNLVKRYKWEKLLPHNKISLDPIPVPIEGLPIRLFPHHP | 483 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10311557 | 10315468 | + | evm.model.ptg000001l.1009 | HCH5g1009 | 545161 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g1009 | 483 | PANTHER | CYTOCHROME P450 26 | 35 | 458 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| HCH5g1009 | 483 | Pfam | Cytochrome P450 | 37 | 455 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 423 | 432 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH5g1009 | 483 | SUPERFAMILY | Cytochrome P450 | 33 | 480 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | E-class P450 group I signature | 420 | 430 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | E-class P450 group I signature | 282 | 299 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | E-class P450 group I signature | 388 | 412 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | E-class P450 group I signature | 430 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | E-class P450 group I signature | 302 | 328 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | CDD | CYP90-like | 68 | 480 | - | - | |
| HCH5g1009 | 483 | FunFam | Taxadiene 5-alpha hydroxylase | 27 | 481 | - | - | |
| HCH5g1009 | 483 | Gene3D | Cytochrome P450 | 26 | 479 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | P450 superfamily signature | 349 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | P450 superfamily signature | 421 | 430 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | P450 superfamily signature | 293 | 310 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1009 | 483 | PRINTS | P450 superfamily signature | 430 | 441 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0261 | HCH-Chr1:42671834 | HCH5g1009 | HCH-Chr5:10311557 | 2.60E-192 | dispersed | |
| HCH1g0262 | HCH-Chr1:42854366 | HCH5g1009 | HCH-Chr5:10311557 | 1.70E-174 | dispersed | |
| HCH5g1007 | HCH-Chr5:10164641 | HCH5g1009 | HCH-Chr5:10311557 | 1.60E-243 | dispersed | |
| HCH5g1009 | HCH-Chr5:10311557 | HCH5g1011 | HCH-Chr5:10492721 | 1.10E-199 | dispersed | |
| HCH5g1008 | HCH-Chr5:10289010 | HCH5g1009 | HCH-Chr5:10311557 | 2.70E-251 | tandem | |
| HCH5g1009 | HCH-Chr5:10311557 | HCH5g1010 | HCH-Chr5:10459873 | 3.30E-209 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g1009 | K20667 | - | gmx:100801007 | 630.557 |