Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g1011 | ATGGGGTTTCTCTTGCTCTGTTGTGTTATTCTCACTATTCTCATCTTCATTTTTCTCTCTTTTAGACGAAGAGGAACCAGTGTTTCCTCTCACTCCAATCTCCCACCTGGGAATATGGGGTTTCCATTCATCGGTGAGAGCATCGATTACATTAAATCTGGCAGAAATGGTCATCCAGAAGATTTCATATTCAAGAGAATGGCCAAATTCTGTCCTCAAATCTTCAAAACTTGTATTCTTGGAGAGCCCACAGTAGTGTTATGTGGAGCCTCAGGAAACAAGTTTTTGTTTTCCAATGAAGACAAGCTCGTCACAGCTTGGTGGCCTAATTCACTCACTAAAATCTTCCCTTCCAAAGCTGATGTAGATGGTCTTGGTCAAGAATCCAAGAAAATGAGGAAGATGCTTCCAAATTTCTTAAACCCTGAAGCCTTGAAGAGATATATAAGCACCATGGATTCAATTGCACAAGACCATTTCCAAGAATGCTGGGAAGGGAGGCAAAACGTCACCGTTTATCCTCTTTCAATGAGATTCACCTTTCATTTGGCTTGTAAACTCTTTCTGAGTATGGAAGATACTGAGAAAGTTACCAAATTTGGAGGTCCTTTCCATATTTTATCATCTGGGATCTTCTCTTTCCCTATAAACTTTCCAGGAACCGCTTTTAATAGAGCAATCAAGGCTTCTATTGTGATAAGAGACGAAATAGCGAGTATTATAAAGCAGAGAAAGATGGATCTTGCAGAGAAGAAGGATTCTCCTGTAAGAGATATTTTAACACATATGCTGTTGACAGTTGATGAGGATGGACAATATTCATCTGAATCAGATATAGCAAATAGGATTCTTGCTTTGCTTCTTGGGGGTCATGATACTGCAAGTTCTGTGGTTACATCTTTAGTCAACTATCTGGCTGAGCTTCCTGAGATCTACAACCAAGTTTATATGGAACAAATGGAGATTGCAAAATCAAAGAGAGATGGAGAGTTTTTGAATTGGGATGACATTCAAAAGATGAAGTATTCATGGAATGTTGCGTGTGAAGTGATGAGACTTGCCCCTCCTCTTCAGGGTACTTTCAGGATGGCTATGATTGATTTCAATTTTGCTGGTTTCTCCATTCCCAAGGGTTGGAAGCTATATTGGAGTACATATGCAACACACAAGAATCCGGAATACTTTCCGGAGCCAAAAAAGTTTGAGCCATCGAGATTTGAAGGGAATGGTCCAATTCCATATAGTTTTGTTCCATTTGGAGGAGGGCCAAGAATGTGTCCTGGAAAAGAATATGCACGTTTGGAAATACTTGTTTTCATGCATAACTTAGTGAAGAGATATAAATGGGAGAAGTTACTTCCTCATGGTAAGATTACTATGAATCCATTGCCAACTCCAGCTAAAGGCCTACCAATTCGCCTTATTCCGCATCGTGCATGA | 1440 | 39.86 | MGFLLLCCVILTILIFIFLSFRRRGTSVSSHSNLPPGNMGFPFIGESIDYIKSGRNGHPEDFIFKRMAKFCPQIFKTCILGEPTVVLCGASGNKFLFSNEDKLVTAWWPNSLTKIFPSKADVDGLGQESKKMRKMLPNFLNPEALKRYISTMDSIAQDHFQECWEGRQNVTVYPLSMRFTFHLACKLFLSMEDTEKVTKFGGPFHILSSGIFSFPINFPGTAFNRAIKASIVIRDEIASIIKQRKMDLAEKKDSPVRDILTHMLLTVDEDGQYSSESDIANRILALLLGGHDTASSVVTSLVNYLAELPEIYNQVYMEQMEIAKSKRDGEFLNWDDIQKMKYSWNVACEVMRLAPPLQGTFRMAMIDFNFAGFSIPKGWKLYWSTYATHKNPEYFPEPKKFEPSRFEGNGPIPYSFVPFGGGPRMCPGKEYARLEILVFMHNLVKRYKWEKLLPHGKITMNPLPTPAKGLPIRLIPHRA | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10492721 | 10499906 | + | evm.model.ptg000001l.1011 | HCH5g1011 | 545163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g1011 | 479 | CDD | CYP90-like | 66 | 476 | - | - | |
| HCH5g1011 | 479 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 419 | 428 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH5g1011 | 479 | PRINTS | E-class P450 group I signature | 426 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | PRINTS | E-class P450 group I signature | 278 | 295 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | PRINTS | E-class P450 group I signature | 416 | 426 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | PRINTS | E-class P450 group I signature | 384 | 408 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | PANTHER | CYTOCHROME P450 26 | 33 | 454 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| HCH5g1011 | 479 | Gene3D | Cytochrome P450 | 25 | 476 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | SUPERFAMILY | Cytochrome P450 | 31 | 476 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | Pfam | Cytochrome P450 | 35 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | PRINTS | P450 superfamily signature | 417 | 426 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | PRINTS | P450 superfamily signature | 426 | 437 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | PRINTS | P450 superfamily signature | 289 | 306 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | PRINTS | P450 superfamily signature | 345 | 356 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1011 | 479 | FunFam | Taxadiene 5-alpha hydroxylase | 25 | 477 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g1182 | HCH-Chr12:10306551 | HCH5g1011 | HCH-Chr5:10492721 | 1.30E-90 | dispersed | |
| HCH12g1183 | HCH-Chr12:10329269 | HCH5g1011 | HCH-Chr5:10492721 | 2.70E-102 | dispersed | |
| HCH5g1009 | HCH-Chr5:10311557 | HCH5g1011 | HCH-Chr5:10492721 | 1.10E-199 | dispersed | |
| HCH5g1011 | HCH-Chr5:10492721 | HCH8g1097 | HCH-Chr8:46768633 | 4.40E-161 | dispersed | |
| HCH5g1010 | HCH-Chr5:10459873 | HCH5g1011 | HCH-Chr5:10492721 | 6.50E-189 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g1011 | K20667 | - | rcu:8282102 | 635.18 |