Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1038 ATGGATGAGGATTTTGATATTCCTGCAGCTGAGGAAATGAACGAGGACTTCGATCTTCCAGATGAAGCCCCTGTAATCAAGGTCGGCGAGGAAAAGGAAATCGGAAAACAGGGATTGAAGAAGAAGCTTCTTAAGGAAGGTGCAGGTTGGATCACTCCTGAGAATGGCGACGAAGTTGAAGTTCATTATACGGGTACTTTGCTTGATGGGACTCAGTTTGATTCAAGTCGTGATAGAGGAACCCCCTTCAAGTTCACTCTTGGTCAAGGACAAGTGATTAAAGGATGGGATCAGGGTATTAAAACAATGAAGAAAGGCGAACAAGCTCTTTTTACCATTCCTCCTGAGCTGGCTTATGGTGAATCTGGGTCCCCTCCAACCATTCCTCCTAAATCTACGTTGCAGTTTGATGTTGAGTTACTGTCGTGGTCAAGTGTTAAGGACATATGTAAGGATGGAGGAATATTCAAGAAGATTCTAACTGAAGGAGACAAATGGGAAAATCCAAAGGATCCCGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTGGAAGATGGCACATTTGTTGCGAAAGCAGATGGAGTGGAATTCACTGTTGGGGAAGGTTACTTTTGCCCTGCTCTCGCAAAGGCTGTTAAAACTATGAAAAAAGGTGAAAAGGCACTCCTCACAGTGAAACCACAATATGGGTTTGGGGAGAAAGGTAAACCAGCCTCTGGTAATGAAGGTGTAGTTCCACCAAATGAAACTCTTGAGATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACTGATGACAAAAAAGTTATCAAGAAAATTTTGAAGGAAGGAGATGGGTATGAGAAGCCGAATGATGGAGCAGTTGTCAAAGTGAAATTGGTTGGAAAGTTGCAAGATGGCACAGTATTTTTGAAGAAGGGATATAGTGATGGTGAGGAGCTGTTTGAGTTTAAAACTGATGAAGAACAAGTGATTGATGGCCTTGACAAAGCTGTGGTCACAATGAAAAAAGGTGAGATTGCCCTGCTGACCATTGCACCAGAGTATGCTTTTGGTTCAACTGAGTCTCGGCAGGAGTTGGCTATTGTTCCTCCTAATTCAACTGTGTACTATGAAGTTGAGCTGGTGTCTTTTGACAAGGAGAAGGAATCATGGGATATGAACAACCAGGAAAAGATTGAAGCTGCTGGTAGAAAAAAGGAAGAAGGAAATGTTTTGTTTAAGACTGGAAAATATGCTAGAGCTTCCAAGAGATACGAGAAGGCTGTGAAGTACATAGAATATGATTCTTCGTTTAGTGAAGAAGAGAAAAAGCAGGCGAAGGCATTGAAAGTTGCTTGCAATTTGAACAATGCAGCTTGTAAGTTGAAATTGAAGCTATACAATGAGGCAGAGAAATTGTGTACCAAGGTTCTAGATGCCGAGAGCACAAATGTTAAGGCTCTCTATAGAAGGGCCCAGGCATATATACAACTGACTGATTTGGATTTGGCAGAGTTTGACATTAAGAAAGCTCTTGATATCGAACCAAATAACAGGGATGTGAAATTGGAGTACAAAACTCTAAAGGAGAAGGTGAAAGAAATCAACAAAAAGGATGCCAAGTTTTACGGCAACATGTTTGCTAAAATGAAGAAATTAGAATCCCTTGAATCTGATAAAGCGGGGGCCAAGGAAGCGGAGCCTGCGAAAATAGATAGCAAAGAGTAG 1719 41.36 MDEDFDIPAAEEMNEDFDLPDEAPVIKVGEEKEIGKQGLKKKLLKEGAGWITPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGEQALFTIPPELAYGESGSPPTIPPKSTLQFDVELLSWSSVKDICKDGGIFKKILTEGDKWENPKDPDEVLVNFEAKLEDGTFVAKADGVEFTVGEGYFCPALAKAVKTMKKGEKALLTVKPQYGFGEKGKPASGNEGVVPPNETLEITLELVSWKTVSEVTDDKKVIKKILKEGDGYEKPNDGAVVKVKLVGKLQDGTVFLKKGYSDGEELFEFKTDEEQVIDGLDKAVVTMKKGEIALLTIAPEYAFGSTESRQELAIVPPNSTVYYEVELVSFDKEKESWDMNNQEKIEAAGRKKEEGNVLFKTGKYARASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLDAESTNVKALYRRAQAYIQLTDLDLAEFDIKKALDIEPNNRDVKLEYKTLKEKVKEINKKDAKFYGNMFAKMKKLESLESDKAGAKEAEPAKIDSKE 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11854813 11861361 + evm.model.ptg000001l.1038 HCH5g1038 545190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1038 572 SUPERFAMILY FKBP-like 265 399 - -
HCH5g1038 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755(InterPro)
HCH5g1038 572 PANTHER PEPTIDYLPROLYL ISOMERASE 30 142 IPR050754 -
HCH5g1038 572 FunFam Peptidylprolyl isomerase 29 147 - -
HCH5g1038 572 Coils Coil 515 535 - -
HCH5g1038 572 Pfam Tetratricopeptide repeat 483 515 IPR019734 GO:0005515(InterPro)
HCH5g1038 572 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515(InterPro)
HCH5g1038 572 SUPERFAMILY TPR-like 387 547 IPR011990 GO:0005515(InterPro)
HCH5g1038 572 SMART tpr_5 399 432 IPR019734 GO:0005515(InterPro)
HCH5g1038 572 SMART tpr_5 482 515 IPR019734 GO:0005515(InterPro)
HCH5g1038 572 SMART tpr_5 448 481 IPR019734 GO:0005515(InterPro)
HCH5g1038 572 FunFam Peptidylprolyl isomerase 387 542 - -
HCH5g1038 572 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515(InterPro)
HCH5g1038 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 258 IPR001179 GO:0003755(InterPro)
HCH5g1038 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755(InterPro)
HCH5g1038 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 379 IPR001179 GO:0003755(InterPro)
HCH5g1038 572 SUPERFAMILY FKBP-like 148 264 - -
HCH5g1038 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755(InterPro)
HCH5g1038 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755(InterPro)
HCH5g1038 572 FunFam Peptidylprolyl isomerase 148 261 - -
HCH5g1038 572 Gene3D - 29 147 IPR046357 GO:0003755(InterPro)
HCH5g1038 572 Gene3D - 262 383 IPR046357 GO:0003755(InterPro)
HCH5g1038 572 Gene3D - 148 261 IPR046357 GO:0003755(InterPro)
HCH5g1038 572 FunFam Peptidylprolyl isomerase 262 384 - -
HCH5g1038 572 SUPERFAMILY FKBP-like 33 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1693 HCH-Chr4:19286386 HCH5g1038 HCH-Chr5:11854813 5.80E-16 dispersed
HCH5g1038 HCH-Chr5:11854813 HCH7g0943 HCH-Chr7:38144606 1.40E-238 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1038 K09571 - csv:101214513 947.577