Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1039 ATGTCTCGATCGCCAAATTATGAGTTCCAAGAATGGTGGAATAAGCAAAGAGAGAGAAATCCCGATGAACTCTTACTGGAGAAGTCTGAAAGTTACCCTAATCCTGCATTTCTCTCCGTTGAGATCCGAAATCCCGATACTTCTCAAGATCGAACGGTTGATAAGAACCGGGCAAGGACAAGGAGTGCCCGTCAGATTTCTTGGGTTTTTCTATTGAAATTCCAGCAAATTGCTGCATCCCTTGCTTCCATTACCAATGGTCTCATTTTCCTTATCCGTACTGCTAATCGTCGTATCTTGTCGCCTGATTCTCCGGCCGATTCAAGTTCGTCTCGGCTTTATCGAATTATCAAAGCCTTTTTGATCATTGTGCTGGTATTGCTTTTCTTTGAACTTGTGGCATACTTTAATGGCTGGCATTTTAGCCCCCCGTCGGTGGGTTCAGCCGAGGTGCTTGGATTTATAGGGGTTATCTATGCTAATTGGCTTGAGATTCGTGCAAATTATTTGGCTCCACCATTACAGATCTTGACCAATGTGTGCATTGTGTTATTCTTGATACAATCAGTGGATCGTGTGGCTTTAACACTGGGGTGTTTTTGGATCAAGTTTAGGCGGTTGAAGCCCGTAGCGGCATTCGAGTACTCTGCTACTGACGACAGTGTCGGTGTTGATGATTATCCAATGGTGTTGGTTCAAATTCCCATGTGCAATGAGAGGGAGGTTTACCAACAATCTATTGCGGCAGTTTGTATCCAAGATTGGCCAAAGGATAAAATGCTCGTACAAGTTCTAGATGATTCTGATGACCTAGATGTTCAACTTCTTATTAAGGCTGAAGTACAAAAATGGCAACAGAGGGGTGTCCGCATATTATATAGACACCGCCTCATACGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCAATGGGATGTGATTATGTAAAAAATTATGAGTTTGTAGCAATTTTTGATGCAGATTTCCAGCCTGGACCAGACTTTTTAAAGAAAACCATTCCATATTTCAAGGGGAATGATGATCTTGCATTGGTTCAAACAAGGTGGTCATTTGTGAACAAGGATGAAAATCTGCTCACGAGACTGCAGAACATAAATTTATCATTCCATTTTGAAGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTCGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTAGAAGATTGTGGAGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCAGTCCGTGCTCATCTTTGTGGTTGGAAGTTCATATATCTAAATGATGTCAAGTGCCTTTGTGAACTTCCGGAGTCGTATGAAGCATACAAGAAACAACAACACCGCTGGCATTCTGGTCCAATGCAGTTATTTCGTTTGTGCTTCTCTGATATACTCAAATCAAAGGTGAGTTGGCCCAAGAAAGCTAATTTGATTTTTCTTTTTTTCCTTTTGCGAAAGCTCGTCCTTCCCTTTTATTCCTTCACCCTTTTCTGCATCATTCTTCCATTGACTATGTTCCTTCCAGAAGCTCAGCTACCTGCTTGGGTTGTTTGCTATGTTCCTGGAATCATGTCCATCTTAAATATTATACCAGCACCGCGATCTTTCCCTTTTATAGTCCCCTATCTTCTATTTGAAAACACCATGTCTGTTACCAAATTCAATGCCATGATATCAGGGTTGTTCCGCTTTGGAAGTTCATATGAATGGATAGTTACAAAAAAGTTGGGAAGATCATCCGAAACTGATCTAGTTGCCTTTGAAAAGGAGTCGGAGCCTCTAGTTAGAAGTACAAGTCTTCATCGATCTTCCTCAGAATCAGGTCTTCAGGAACTGACCAAGCTTGAGATATCTAAAAAAGCAGGGAAAAGCAGAAGGAATCGCCTGTACAGGAAGGAATTGGCTCTTGCATTTATTTTGTTAACAGCCTCCGTGAGAAGTTTGTTGTCTGCTCAAGGAATTCATTTCTACTTCCTATTATTTCAGGGTATCACTTTTCTAGTAGTTGGTCTTGATTTAATTGGAGAGCAGGTTAGTTGA 2073 41.29 MSRSPNYEFQEWWNKQRERNPDELLLEKSESYPNPAFLSVEIRNPDTSQDRTVDKNRARTRSARQISWVFLLKFQQIAASLASITNGLIFLIRTANRRILSPDSPADSSSSRLYRIIKAFLIIVLVLLFFELVAYFNGWHFSPPSVGSAEVLGFIGVIYANWLEIRANYLAPPLQILTNVCIVLFLIQSVDRVALTLGCFWIKFRRLKPVAAFEYSATDDSVGVDDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLVQVLDDSDDLDVQLLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKNYEFVAIFDADFQPGPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEDCGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFSDILKSKVSWPKKANLIFLFFLLRKLVLPFYSFTLFCIILPLTMFLPEAQLPAWVVCYVPGIMSILNIIPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRSSETDLVAFEKESEPLVRSTSLHRSSSESGLQELTKLEISKKAGKSRRNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11867337 11874529 - evm.model.ptg000001l.1039 HCH5g1039 545191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1039 690 FunFam probable xyloglucan glycosyltransferase 5 221 446 - -
HCH5g1039 690 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 219 446 IPR029044 -
HCH5g1039 690 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 689 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
HCH5g1039 690 Pfam Glycosyl transferase family group 2 322 519 IPR001173 -
HCH5g1039 690 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 506 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1156 HCH-Chr3:40341228 HCH5g1039 HCH-Chr5:11867337 9.50E-112 dispersed
HCH4g0567 HCH-Chr4:3711248 HCH5g1039 HCH-Chr5:11867337 1.00E-243 dispersed
HCH5g1039 HCH-Chr5:11867337 HCH9g0526 HCH-Chr9:3392442 1.90E-112 dispersed
HCH5g1039 HCH-Chr5:11867337 HCH12g0532 HCH-Chr12:3125612 7.50E-247 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1039 - - - 0.0