Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g1042 | ATGGAAAACGAGTTCTTCCTAAATCTTGGAAATGGAACAATCCCTCCATCACTTGTTCATTTTGAATCAACCCCTTCTATCGATATCCAAACTCCTGATTGCTTCCTCAATTCCCATCACAATTTCCACTTCAATTCCAATTCCAATTCCAATCCATCCAATGAAACCTTCATGATCAGGGAATTGATTGGCAAATTGGGGAGTATTGGGAATTCCAGTGTCAGAAAATCAATGCCGTTGAATTCAACTGTCGTTGGGGAATTCTCCGCTGACCCTGGATTTGCTGAGAGAGCTGCCAGGCTTTCTTGTTTTGGGAGTAGGAGTTTTAATGGTCGTAATAATAATAATAGTAGTAGTCAATTGCTGCAGAATTATGGATCTAATTCTTTGATTGTCAACGAGGGAATTTCTCGGGTTTCAAGCAGTCCTTCATTGAAAGCTCTTGGATCTGAATTGGGTTTTCTTCAAAACAAGAATTCATCCAATGAAATGGCCAATTCACAAGATGAATCCACTCTCTCTGACCAAAACCCAAATGGGGAAAAGGGGTTGCTTAATTCAAGGAAAAGAAAAGCTTTTTCTAAAGGGAAACTCAAAGAACCTCCCTCCTCTTCTTCCCCTTCCAAGGTTGTTGAAGTTAATGATAAGTCAAGTTCAAAGAGATGCAAAGTAGCAGAAAGTAATGAAAATGAGAAGGGTAATGTTAAAAATGAGGAAGAATCCAAGAAAAATGATGGTAGTGGAGGAGAAGAGAAGCAAACAAAGACAAATTCTAAGCCTCCAGAGCCTCCTAAAGATTATATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGACAGCCACAGCCTAGCTGAAAGAGTTAGAAGAGAGAAGATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTTCCTGGTTGCAATAAGGTAACTGGGAAAGCTCTGATGCTAGATGAGATTATCAATTATGTGCAGTCATTGCAACACCAAGTTGAGTTTCTGTCTATGAAGCTGGCTTCAGTTAACACCAGGGCTGATTTCAACATGGATTCTCTCATCTCAAAAGAGATGTATCAATCAGGGAACCCTTTGACACACCCTCAAATTTCCCCTATAGATTCCTCAGCCTCAGCCTTTTATGGGCAGCAGCAGCCTCAACAAAATGCAGCCCTACCAAGCAGCTCTTATGGGGCTCCTAGAGCCACTCCCCATTGCTCTGTGGACCCTTTGGACTCTGTTTTATGTCAATTACCCTCCCTTAATCCATTTACTGAAAACCCTTCTCAGTATCCTACTTTTGGTGAAGATGACTTACAAACTATTGTTCAGATGGGATTTGTCCAAAACCAAAACCAGGAAATATCATTGCAATCTCAGAACTTTAATATAGGCTCAGACATGAAAATTGAACTCTGA | 1413 | 40.41 | MENEFFLNLGNGTIPPSLVHFESTPSIDIQTPDCFLNSHHNFHFNSNSNSNPSNETFMIRELIGKLGSIGNSSVRKSMPLNSTVVGEFSADPGFAERAARLSCFGSRSFNGRNNNNSSSQLLQNYGSNSLIVNEGISRVSSSPSLKALGSELGFLQNKNSSNEMANSQDESTLSDQNPNGEKGLLNSRKRKAFSKGKLKEPPSSSSPSKVVEVNDKSSSKRCKVAESNENEKGNVKNEEESKKNDGSGGEEKQTKTNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTRADFNMDSLISKEMYQSGNPLTHPQISPIDSSASAFYGQQQPQQNAALPSSSYGAPRATPHCSVDPLDSVLCQLPSLNPFTENPSQYPTFGEDDLQTIVQMGFVQNQNQEISLQSQNFNIGSDMKIEL | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 12081685 | 12083816 | - | evm.model.ptg000001l.1042 | HCH5g1042 | 545194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g1042 | 470 | Pfam | Helix-loop-helix DNA-binding domain | 280 | 327 | IPR011598 | GO:0046983(InterPro) | |
HCH5g1042 | 470 | SMART | finulus | 282 | 332 | IPR011598 | GO:0046983(InterPro) | |
HCH5g1042 | 470 | Gene3D | - | 273 | 347 | IPR036638 | GO:0046983(InterPro) | |
HCH5g1042 | 470 | MobiDBLite | consensus disorder prediction | 161 | 267 | - | - | |
HCH5g1042 | 470 | FunFam | Basic helix-loop-helix transcription factor | 273 | 345 | - | - | |
HCH5g1042 | 470 | MobiDBLite | consensus disorder prediction | 161 | 183 | - | - | |
HCH5g1042 | 470 | MobiDBLite | consensus disorder prediction | 378 | 394 | - | - | |
HCH5g1042 | 470 | MobiDBLite | consensus disorder prediction | 378 | 401 | - | - | |
HCH5g1042 | 470 | CDD | bHLH_AtBPE_like | 266 | 351 | - | - | |
HCH5g1042 | 470 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 274 | 344 | IPR036638 | GO:0046983(InterPro) | |
HCH5g1042 | 470 | MobiDBLite | consensus disorder prediction | 199 | 213 | - | - | |
HCH5g1042 | 470 | MobiDBLite | consensus disorder prediction | 214 | 267 | - | - | |
HCH5g1042 | 470 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 276 | 326 | IPR011598 | GO:0046983(InterPro) | |
HCH5g1042 | 470 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 87 | 424 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0451 | HCH-Chr2:47976348 | HCH5g1042 | HCH-Chr5:12081685 | 4.10E-33 | dispersed | |
HCH3g0474 | HCH-Chr3:3051302 | HCH5g1042 | HCH-Chr5:12081685 | 3.70E-32 | dispersed | |
HCH5g1042 | HCH-Chr5:12081685 | HCH7g0939 | HCH-Chr7:37872082 | 7.80E-62 | dispersed | |
HCH5g1042 | HCH-Chr5:12081685 | HCH10g1202 | HCH-Chr10:42953550 | 3.40E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33645 | PF00010 | HLH | 3.50E-06 | No_clan | HCH | TF |
Pathway information
