Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1042 ATGGAAAACGAGTTCTTCCTAAATCTTGGAAATGGAACAATCCCTCCATCACTTGTTCATTTTGAATCAACCCCTTCTATCGATATCCAAACTCCTGATTGCTTCCTCAATTCCCATCACAATTTCCACTTCAATTCCAATTCCAATTCCAATCCATCCAATGAAACCTTCATGATCAGGGAATTGATTGGCAAATTGGGGAGTATTGGGAATTCCAGTGTCAGAAAATCAATGCCGTTGAATTCAACTGTCGTTGGGGAATTCTCCGCTGACCCTGGATTTGCTGAGAGAGCTGCCAGGCTTTCTTGTTTTGGGAGTAGGAGTTTTAATGGTCGTAATAATAATAATAGTAGTAGTCAATTGCTGCAGAATTATGGATCTAATTCTTTGATTGTCAACGAGGGAATTTCTCGGGTTTCAAGCAGTCCTTCATTGAAAGCTCTTGGATCTGAATTGGGTTTTCTTCAAAACAAGAATTCATCCAATGAAATGGCCAATTCACAAGATGAATCCACTCTCTCTGACCAAAACCCAAATGGGGAAAAGGGGTTGCTTAATTCAAGGAAAAGAAAAGCTTTTTCTAAAGGGAAACTCAAAGAACCTCCCTCCTCTTCTTCCCCTTCCAAGGTTGTTGAAGTTAATGATAAGTCAAGTTCAAAGAGATGCAAAGTAGCAGAAAGTAATGAAAATGAGAAGGGTAATGTTAAAAATGAGGAAGAATCCAAGAAAAATGATGGTAGTGGAGGAGAAGAGAAGCAAACAAAGACAAATTCTAAGCCTCCAGAGCCTCCTAAAGATTATATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGACAGCCACAGCCTAGCTGAAAGAGTTAGAAGAGAGAAGATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTTCCTGGTTGCAATAAGGTAACTGGGAAAGCTCTGATGCTAGATGAGATTATCAATTATGTGCAGTCATTGCAACACCAAGTTGAGTTTCTGTCTATGAAGCTGGCTTCAGTTAACACCAGGGCTGATTTCAACATGGATTCTCTCATCTCAAAAGAGATGTATCAATCAGGGAACCCTTTGACACACCCTCAAATTTCCCCTATAGATTCCTCAGCCTCAGCCTTTTATGGGCAGCAGCAGCCTCAACAAAATGCAGCCCTACCAAGCAGCTCTTATGGGGCTCCTAGAGCCACTCCCCATTGCTCTGTGGACCCTTTGGACTCTGTTTTATGTCAATTACCCTCCCTTAATCCATTTACTGAAAACCCTTCTCAGTATCCTACTTTTGGTGAAGATGACTTACAAACTATTGTTCAGATGGGATTTGTCCAAAACCAAAACCAGGAAATATCATTGCAATCTCAGAACTTTAATATAGGCTCAGACATGAAAATTGAACTCTGA 1413 40.41 MENEFFLNLGNGTIPPSLVHFESTPSIDIQTPDCFLNSHHNFHFNSNSNSNPSNETFMIRELIGKLGSIGNSSVRKSMPLNSTVVGEFSADPGFAERAARLSCFGSRSFNGRNNNNSSSQLLQNYGSNSLIVNEGISRVSSSPSLKALGSELGFLQNKNSSNEMANSQDESTLSDQNPNGEKGLLNSRKRKAFSKGKLKEPPSSSSPSKVVEVNDKSSSKRCKVAESNENEKGNVKNEEESKKNDGSGGEEKQTKTNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTRADFNMDSLISKEMYQSGNPLTHPQISPIDSSASAFYGQQQPQQNAALPSSSYGAPRATPHCSVDPLDSVLCQLPSLNPFTENPSQYPTFGEDDLQTIVQMGFVQNQNQEISLQSQNFNIGSDMKIEL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12081685 12083816 - evm.model.ptg000001l.1042 HCH5g1042 545194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1042 470 Pfam Helix-loop-helix DNA-binding domain 280 327 IPR011598 GO:0046983(InterPro)
HCH5g1042 470 SMART finulus 282 332 IPR011598 GO:0046983(InterPro)
HCH5g1042 470 Gene3D - 273 347 IPR036638 GO:0046983(InterPro)
HCH5g1042 470 MobiDBLite consensus disorder prediction 161 267 - -
HCH5g1042 470 FunFam Basic helix-loop-helix transcription factor 273 345 - -
HCH5g1042 470 MobiDBLite consensus disorder prediction 161 183 - -
HCH5g1042 470 MobiDBLite consensus disorder prediction 378 394 - -
HCH5g1042 470 MobiDBLite consensus disorder prediction 378 401 - -
HCH5g1042 470 CDD bHLH_AtBPE_like 266 351 - -
HCH5g1042 470 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 344 IPR036638 GO:0046983(InterPro)
HCH5g1042 470 MobiDBLite consensus disorder prediction 199 213 - -
HCH5g1042 470 MobiDBLite consensus disorder prediction 214 267 - -
HCH5g1042 470 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 326 IPR011598 GO:0046983(InterPro)
HCH5g1042 470 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 424 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0451 HCH-Chr2:47976348 HCH5g1042 HCH-Chr5:12081685 4.10E-33 dispersed
HCH3g0474 HCH-Chr3:3051302 HCH5g1042 HCH-Chr5:12081685 3.70E-32 dispersed
HCH5g1042 HCH-Chr5:12081685 HCH7g0939 HCH-Chr7:37872082 7.80E-62 dispersed
HCH5g1042 HCH-Chr5:12081685 HCH10g1202 HCH-Chr10:42953550 3.40E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33645 PF00010 HLH 3.50E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1042 - - - 0.0