Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g1047 | ATGAACGACCAAACTCACCTCCATGAAGAAATTCCCAACGTGGATTTCCAAAATCTAGACATCATTACGGCTCTCGGCCGTGGAGCCAAAGGAGTGGTTTTCCTCGCTCGAAACGTAGAAAACAAGGAATTATTAGCCTTAAAGGTAATTTCAAGAGCTTTGATTGAAAGAAAAAAATCCACCAAATCTCCTCAAAACAACAACGACAACGATAGAGGAGACGAATACAAAAGGGTTTGCTTCGAACGAGAAGTATTACGATTATTTCAACACCCACTTTTACCACAATTACGCGGCGTTTTGGATACTCAAAAAGTCGTGGGTTACGCTATTGATTATTGTTCTGGCCGTGATCTTAATACTCTCCGGAAAAAACAAACTGAAAAAATGTTCTCCGATGATGTTATTAGGTTCTACGCTGCGGAATTAGTTATGGCACTGGAATACGTACACAGCTTAGGAATAGTTTATAGAGATCTGAAACCGGAAAACGTGATGCTTCAACAAAATGGTCATATAATGCTTGTCGATTTCGATCTCTCTACAAGACTCTCTCAACGAACTCCTAAACTTTCTCCTTCTCCGTCTCCGCCGCCACCGCGGGTTTTGAAAAAATCGGATTCAGTCAAGAAAAAGCGATTCTTTCCGTTTCATAGTTTTTGCAACTCTGGGATTTCGCCGGACGATTCGTTATCGTCAGATCGGTTTGAGAAATCGGTGGAGGATGTGTCGGAAATGGAGATGGAAGTGGAGTCAGATTCGTCGGAGAAATCGAATTCGTTCGTCGGAACGGAGGAATACGTCGCTCCGGAAATTGTCGCCGGGAAAGGTCATGATTTCGCCGTGGACTGGTGGTCGCTCGGAGTTGTGTTATACGAAATGTTGTACGGTACGACACCGTTTCGGGGAATAAATCGGAAGGAAACGTTTTATCGGATTCTGACGAAATCGCCAGATCTATGCGGGGAAGCGACGGCGTTGAGGGATTTGATAAAGAGATTGCTGGAGAAAGATCCACGGGTAAGGATCGAGTTGGAGGAAATCAAGGGCCATGATTTCTTCAAAGGGATCGATTGGGATTTAGTTTTGCAACTAGCGCGGCCACCGTCGGTACCGGAAATTGGGGAGGAGGATATGGAAGGAAATAGTGAAATTGATGTGGAGTCTTTCGTCCAAGAAATATTTAGCAGCGAGGAAAGTGAAAAAGGAAAAGATCGAAATAATAATCACACGACGGAAAATAACAGCGTGTGTGGGAAAGAACTCAGTCCTACTAATTATACGGATTCTGACAGATTTCTTTTGTTCTGA | 1311 | 43.55 | MNDQTHLHEEIPNVDFQNLDIITALGRGAKGVVFLARNVENKELLALKVISRALIERKKSTKSPQNNNDNDRGDEYKRVCFEREVLRLFQHPLLPQLRGVLDTQKVVGYAIDYCSGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMLQQNGHIMLVDFDLSTRLSQRTPKLSPSPSPPPPRVLKKSDSVKKKRFFPFHSFCNSGISPDDSLSSDRFEKSVEDVSEMEMEVESDSSEKSNSFVGTEEYVAPEIVAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGINRKETFYRILTKSPDLCGEATALRDLIKRLLEKDPRVRIELEEIKGHDFFKGIDWDLVLQLARPPSVPEIGEEDMEGNSEIDVESFVQEIFSSEESEKGKDRNNNHTTENNSVCGKELSPTNYTDSDRFLLF | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 12511927 | 12513313 | + | evm.model.ptg000001l.1047 | HCH5g1047 | 545199 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g1047 | 436 | MobiDBLite | consensus disorder prediction | 396 | 431 | - | - | |
HCH5g1047 | 436 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 355 | 436 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1047 | 436 | Gene3D | Transferase(Phosphotransferase) domain 1 | 253 | 373 | - | - | |
HCH5g1047 | 436 | FunFam | Serine/threonine-protein kinase OXI1 | 118 | 186 | - | - | |
HCH5g1047 | 436 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 376 | IPR011009 | - | |
HCH5g1047 | 436 | SMART | serkin_6 | 19 | 354 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1047 | 436 | Pfam | Protein kinase domain | 22 | 189 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1047 | 436 | Pfam | Protein kinase domain | 254 | 354 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1047 | 436 | FunFam | Serine/threonine-protein kinase OXI1 | 256 | 373 | - | - | |
HCH5g1047 | 436 | ProSiteProfiles | Protein kinase domain profile. | 19 | 354 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1047 | 436 | Gene3D | Phosphorylase Kinase; domain 1 | 374 | 383 | - | - | |
HCH5g1047 | 436 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 155 | 167 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH5g1047 | 436 | Gene3D | Transferase(Phosphotransferase) domain 1 | 118 | 189 | - | - | |
HCH5g1047 | 436 | MobiDBLite | consensus disorder prediction | 410 | 430 | - | - | |
HCH5g1047 | 436 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 117 | - | - | |
HCH5g1047 | 436 | PANTHER | FLIPPASE KINASE 1-RELATED | 9 | 396 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g1047 | HCH-Chr5:12511927 | HCH7g0369 | HCH-Chr7:2662668 | 4.40E-59 | dispersed | |
HCH5g1047 | HCH-Chr5:12511927 | HCH2g1391 | HCH-Chr2:55685336 | 1.10E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81525 | PF00069 | Pkinase | 1.60E-30 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g1047 | K20714 | - | csv:101223223 | 565.844 |