Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1047 ATGAACGACCAAACTCACCTCCATGAAGAAATTCCCAACGTGGATTTCCAAAATCTAGACATCATTACGGCTCTCGGCCGTGGAGCCAAAGGAGTGGTTTTCCTCGCTCGAAACGTAGAAAACAAGGAATTATTAGCCTTAAAGGTAATTTCAAGAGCTTTGATTGAAAGAAAAAAATCCACCAAATCTCCTCAAAACAACAACGACAACGATAGAGGAGACGAATACAAAAGGGTTTGCTTCGAACGAGAAGTATTACGATTATTTCAACACCCACTTTTACCACAATTACGCGGCGTTTTGGATACTCAAAAAGTCGTGGGTTACGCTATTGATTATTGTTCTGGCCGTGATCTTAATACTCTCCGGAAAAAACAAACTGAAAAAATGTTCTCCGATGATGTTATTAGGTTCTACGCTGCGGAATTAGTTATGGCACTGGAATACGTACACAGCTTAGGAATAGTTTATAGAGATCTGAAACCGGAAAACGTGATGCTTCAACAAAATGGTCATATAATGCTTGTCGATTTCGATCTCTCTACAAGACTCTCTCAACGAACTCCTAAACTTTCTCCTTCTCCGTCTCCGCCGCCACCGCGGGTTTTGAAAAAATCGGATTCAGTCAAGAAAAAGCGATTCTTTCCGTTTCATAGTTTTTGCAACTCTGGGATTTCGCCGGACGATTCGTTATCGTCAGATCGGTTTGAGAAATCGGTGGAGGATGTGTCGGAAATGGAGATGGAAGTGGAGTCAGATTCGTCGGAGAAATCGAATTCGTTCGTCGGAACGGAGGAATACGTCGCTCCGGAAATTGTCGCCGGGAAAGGTCATGATTTCGCCGTGGACTGGTGGTCGCTCGGAGTTGTGTTATACGAAATGTTGTACGGTACGACACCGTTTCGGGGAATAAATCGGAAGGAAACGTTTTATCGGATTCTGACGAAATCGCCAGATCTATGCGGGGAAGCGACGGCGTTGAGGGATTTGATAAAGAGATTGCTGGAGAAAGATCCACGGGTAAGGATCGAGTTGGAGGAAATCAAGGGCCATGATTTCTTCAAAGGGATCGATTGGGATTTAGTTTTGCAACTAGCGCGGCCACCGTCGGTACCGGAAATTGGGGAGGAGGATATGGAAGGAAATAGTGAAATTGATGTGGAGTCTTTCGTCCAAGAAATATTTAGCAGCGAGGAAAGTGAAAAAGGAAAAGATCGAAATAATAATCACACGACGGAAAATAACAGCGTGTGTGGGAAAGAACTCAGTCCTACTAATTATACGGATTCTGACAGATTTCTTTTGTTCTGA 1311 43.55 MNDQTHLHEEIPNVDFQNLDIITALGRGAKGVVFLARNVENKELLALKVISRALIERKKSTKSPQNNNDNDRGDEYKRVCFEREVLRLFQHPLLPQLRGVLDTQKVVGYAIDYCSGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMLQQNGHIMLVDFDLSTRLSQRTPKLSPSPSPPPPRVLKKSDSVKKKRFFPFHSFCNSGISPDDSLSSDRFEKSVEDVSEMEMEVESDSSEKSNSFVGTEEYVAPEIVAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGINRKETFYRILTKSPDLCGEATALRDLIKRLLEKDPRVRIELEEIKGHDFFKGIDWDLVLQLARPPSVPEIGEEDMEGNSEIDVESFVQEIFSSEESEKGKDRNNNHTTENNSVCGKELSPTNYTDSDRFLLF 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12511927 12513313 + evm.model.ptg000001l.1047 HCH5g1047 545199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1047 436 MobiDBLite consensus disorder prediction 396 431 - -
HCH5g1047 436 ProSiteProfiles AGC-kinase C-terminal domain profile. 355 436 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1047 436 Gene3D Transferase(Phosphotransferase) domain 1 253 373 - -
HCH5g1047 436 FunFam Serine/threonine-protein kinase OXI1 118 186 - -
HCH5g1047 436 SUPERFAMILY Protein kinase-like (PK-like) 17 376 IPR011009 -
HCH5g1047 436 SMART serkin_6 19 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1047 436 Pfam Protein kinase domain 22 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1047 436 Pfam Protein kinase domain 254 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1047 436 FunFam Serine/threonine-protein kinase OXI1 256 373 - -
HCH5g1047 436 ProSiteProfiles Protein kinase domain profile. 19 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1047 436 Gene3D Phosphorylase Kinase; domain 1 374 383 - -
HCH5g1047 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g1047 436 Gene3D Transferase(Phosphotransferase) domain 1 118 189 - -
HCH5g1047 436 MobiDBLite consensus disorder prediction 410 430 - -
HCH5g1047 436 Gene3D Phosphorylase Kinase; domain 1 19 117 - -
HCH5g1047 436 PANTHER FLIPPASE KINASE 1-RELATED 9 396 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1047 HCH-Chr5:12511927 HCH7g0369 HCH-Chr7:2662668 4.40E-59 dispersed
HCH5g1047 HCH-Chr5:12511927 HCH2g1391 HCH-Chr2:55685336 1.10E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81525 PF00069 Pkinase 1.60E-30 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1047 K20714 - csv:101223223 565.844