Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g1077 | ATGGACTCTCTTCTTCAAATACTCTTCTTCATTACCTCTCTCTTACTCTTCCTAGGTCTAGTCTCCCGGCTCCGGCGAAGATTACCGTATCCGCCGGGGCCGAAAGGCTTACCGTTAATCGGCAACATGTTAATGACCAACCAACTAACCCACCGAGGACTCGCCAAACTCGCCAAACGCTACGGCGGAATCTTCCATCTCCGGATGGGATTCCTCCACATGGTGGCTGTTTCGAACCCCGACATGGCTCGACAAGTTCTTCAAGTAAATGACAATAACTTCTGTAACCGTCCAGCAACCATAGCTATAAACTACTTAACCTACGATCGGGCAGACATGGTTTTCGCTCACTACGGTCCTTTTTGGCGACAGATGCGTAAGGTTTGCGTCATGAAGTTATTCAGCCGCAAACGAGCAGAGTCATGGCAATCGATCCGAGACGAGGTTAACGCGGCGGTCCGAAAAGTCTCTATTCGGACCGGAACCGCCGTGAATATCGGCGAGCTATTGTTTGATTTGACAAGAGATGTAATATTCAGAGCGGCCTTTGGTGTAGGGAAGCACTCACAACAAGGGCAAGATGAGTTTATTAGTATATTGCAAGAGTTTTCTAAGCTTTTCGGAGCTTTTAATATTGCTGATTTTGTTCCAAGTCTTGGTTGGATTGATCCTCATGGCTTGAATAATAGGCTTGTTAAAGCTCGTAATTCACTCGATAGATTTATCGATGATATTATTGATGAACACATGCAAGTGGGCCGAAGGAAAATGAAATCTAAAGATGAAGATGAAGAATTTGACAGTGATATGGTGGATGATTTACTTGCTTTTTATAGTGATGAAGATGCAGGAATTAATGAATCTGATGATCTACAAACCGCCATTAAACTCAACCGTGACAACATCAAAGCTATTATCATGGATGTTATGTTTGGAGGGACAGAAACTGTAGCATCAGCAATCGAATGGGCAATGTCGGAGCTCATGAAAAACCCAGAAGAACTTAAGAAAGTCCAGCAAGAATTATCCCAAGTTGTCGGTCTTGAACGACAAGTCGAAGAAACCGACTTTGAAAAACTCTCTTACTTAAAATGCTGCCTCAAAGAAACCCTACGTCTCCACCCACCGGTCCCTCTCCTCCTCCACGAGACGGCTGCCGATGCGGAGGTTTCTGGCTACTTCATTCCCGCCAAAACCCGCGTCATGATCAACGCATGGGCGATCGGCAGAGACGAGAATTCGTGGGACGACGCCGAAACTTTCCGACCGTCGAGGTTTTTAAAACAAGGAGTTGCTGATTTCAAAGGAGGTCATTTTCAGTTCATCCCATTCGGGTCGGGTCGGAGATCTTGTCCGGGTATGCAGATGGGTTTGTACGCGTTGGAGACGGCGGTGGCTCATTTGCTTCATTGTTTCCTGTGGGAGTTGCCGGACGGAATGCAGCCGAGCGAGATGGATATGAACGACGTGTTTGGTTTGACTGCTCCGAGAGCAACCCGACTTGTCGCTGTTCCTAGTAAGCGGGTTCTTTGCCCTCTTGTTTAA | 1545 | 46.73 | MDSLLQILFFITSLLLFLGLVSRLRRRLPYPPGPKGLPLIGNMLMTNQLTHRGLAKLAKRYGGIFHLRMGFLHMVAVSNPDMARQVLQVNDNNFCNRPATIAINYLTYDRADMVFAHYGPFWRQMRKVCVMKLFSRKRAESWQSIRDEVNAAVRKVSIRTGTAVNIGELLFDLTRDVIFRAAFGVGKHSQQGQDEFISILQEFSKLFGAFNIADFVPSLGWIDPHGLNNRLVKARNSLDRFIDDIIDEHMQVGRRKMKSKDEDEEFDSDMVDDLLAFYSDEDAGINESDDLQTAIKLNRDNIKAIIMDVMFGGTETVASAIEWAMSELMKNPEELKKVQQELSQVVGLERQVEETDFEKLSYLKCCLKETLRLHPPVPLLLHETAADAEVSGYFIPAKTRVMINAWAIGRDENSWDDAETFRPSRFLKQGVADFKGGHFQFIPFGSGRRSCPGMQMGLYALETAVAHLLHCFLWELPDGMQPSEMDMNDVFGLTAPRATRLVAVPSKRVLCPLV | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 16757357 | 16762610 | + | evm.model.ptg000001l.1077 | HCH5g1077 | 545229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g1077 | 514 | SUPERFAMILY | Cytochrome P450 | 31 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | CDD | CYP71-like | 60 | 501 | - | - | |
| HCH5g1077 | 514 | PRINTS | E-class P450 group I signature | 82 | 103 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | E-class P450 group I signature | 441 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | E-class P450 group I signature | 364 | 382 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | E-class P450 group I signature | 451 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | E-class P450 group I signature | 301 | 318 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | E-class P450 group I signature | 404 | 428 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | E-class P450 group I signature | 58 | 77 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | E-class P450 group I signature | 321 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | FunFam | Cytochrome P450 84A1 | 23 | 507 | - | - | |
| HCH5g1077 | 514 | Gene3D | Cytochrome P450 | 22 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | Pfam | Cytochrome P450 | 31 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 444 | 453 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH5g1077 | 514 | PANTHER | CYTOCHROME P450 84A1-RELATED | 5 | 513 | IPR053062 | GO:0004497(PANTHER) | |
| HCH5g1077 | 514 | PRINTS | P450 superfamily signature | 442 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | P450 superfamily signature | 365 | 376 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH5g1077 | 514 | PRINTS | P450 superfamily signature | 312 | 329 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1374 | HCH-Chr13:41635663 | HCH5g1077 | HCH-Chr5:16757357 | 1.10E-218 | dispersed | |
| HCH5g1077 | HCH-Chr5:16757357 | HCH7g0525 | HCH-Chr7:4015481 | 9.10E-197 | dispersed | |
| HCH5g1077 | HCH-Chr5:16757357 | HCH14g0627 | HCH-Chr14:34986218 | 2.00E-289 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g1077 | K09755 | - | mdm:103400991 | 780.4 |