Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1143 ATGGATACTCCTTCGTCCCCTGATTCTCCGACGACTTCTGCTGGTTTCGAAACAGACCAGCTTCCTCACACTTCCGACAACAACTTTCCTGATGACGATGAAGCTTCCGTTGATCCTCACATTCTTCCCCTTCTCGATCATGAACAAGAAGAAGAAGAAGAAGATGGAGAGGATCTTTATCACGACAATTTCTTGGACGATTATCGGACTATGAAAGAGCATGACCATTACGAGTCATTAGGGCTTGATGATTCTTTAGAAGATGAAAGAGATTTGGATCAAATCATGCAAGATCGACGTGCTGCTGATATTGAACTTGATACTCGCGATGCTCGTTTCACCAATCGCAAGCTTCCTCATTTATTACATGACCATGACTCTGAGGATGACAATTACAGGCCTTCTAAAAGATCAAGGGCCGATTTCAGGCCTCCAGCTGCACCCAGAAGTTATGATGATCTTGATGGTATGCAAAGTTCACCCGGTCGATCCCAGAGAGAAAACTCCCGTGATGATGTTCCCTTGACCGATCATTCTGTTGACGATCAATATGAGGATGAAGATGATGATGAGAATGAGAATGAGATGTATCGTGTTCAAGGCCCACTTAGAGAGCATGTTACTATGGACGCTGTTCGGCGCTTTATAGGCAAACGATTCAAAACTTTTTTGGAAACTTATGTCAATCCAAAGAATGAAAATGGTGAACTTGAATACATGCGCCTCATAAATGAGATGGTTTTAGCTAACAAGTGTAGTTTGGAGATTGATTACAAGCAGTTTATCTTTGCTCATCCAAATATTGCTATCTGGTTGGCTGATGCGCCCCAACCTGTCCTAGAGGTTATGGAAGATGTTGCAAAGAAGGTTGTATTTGCAATACATCCAAACTACAAAAATATTCACCAAAAGATTTATGTCCGCATTAATAATTTGCCAGTCTACGATCAGATTCGGAATATTAGGCAAATCCATTTGAATACCATGGTTCGCATTGGGGGAGTGGTGACCCGACGTTCTGGTGTCTTCCCCCAGTTGCAGCAGGTAAAGTATGATTGTAACAAATGTGGGGCCATATTGGGACCGTTCTTTCAGAATTCTTATTCAGAGGTCAAGGTCGGTTCTTGTCCTGAATGCCAATCAAAGGGACCATTCACCATTAATGTTGAGCAGACTATATATAGGAATTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCAGGTCGACTTCCAAGGTACAAGGAAGTGATACTGTTGAATGATCTAATTGATTGTGCCCGCCCTGGGGAAGAGATTGAGGTTACAGGCATTTACACAAACAATTTTGACTTATCGTTAAATACAAAGAATGGTTTTCCTGTATTTGCCACTGTTGTTGAAGCAAATTATGTCACTAAGAAGCAAGATCTCTTCTCTGCTTACAAACTTACCCAGGAAGACAAAGAGGAGATTGAGAAAATGTCTAAAGACCCTAGAATTGGTGAAAGGATAATCAAGTCCATTGCCCCATCAATTTATGGTCATGAGGACATCAAAACTGCCATAGCTCTTGCAATGTTCGGAGGTCAAGAAAAAAATGTAGAAGGGAAACACCGGTTGCGAGGTGATATCAATGTGCTTCTACTGGGAGATCCTGGCACAGCCAAATCTCAATTTCTCAAGTATGTTGAAAAAACTGGGCATAGGGCAGTGTATACCACAGGAAAAGGAGCTTCAGCTGTAGGACTCACAGCAGCAGTGCACAAGGATCCTGTTACAAGGGAGTGGACCCTTGAAGGAGGGGCCCTCGTATTAGCTGATAGAGGAATTTGTCTTATTGATGAGTTCGACAAGATGAATGATCAGGATAGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAAGCAGGAATAGTCACTTCTCTTCAGGCCCGATGTTCTGTCATTGCTGCTGCCAATCCAGTTGGAGGAAGGTATGACTCCTCAAAAACATTTTCTTATAATGTAGAGTTGACAGATCCTATCATTTCTCGATTTGACATACTCTGTGTTGTTAAGGATGTTGTAGATCCCGTAACAGATGAGATGCTTGCAAAGTTTGTCGTTGATAGTCATTTTAAATCACAACCAAAGGGGGCTAATGTTGATGACAATTCTATAAATGAGTCTCAGGATGATGTTCAAAACTCTACAACACCAGTGGATCCTGAGGTGCTCCCTCAAGATCTGCTGAAGAAATACATTACTTATGCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATCTAGATAAGCTAACACATGTATATGCAGAATTGCGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATCGCAGTTAGGCACATTGAGTCAATGATACGAATGTCTGAAGCACATGCAAGAATGCACCTCAGACAGCATGTCATACAAGAAGACGTTGATATGGCAATTCGTGTATTACTTGATTCTTTCATTTCAACCCAAAAATTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACATTCAAAAAGGATTATAATGAACTGCTAATTTATCTTCTTCGAGAGCTTGTGAAGAATGCACTTCACTTTGAAGAAATTGTAGGAGGATCTACATCGGGGCTAACGCATATTGATGTGAAACTGGAAGACCTGCAGAACAAGGCACAGGAACATGAAATTTATGATCTGAAGCCCTTCTTCAGCAGCACTCATTTTTCAAGAGCTAATTTTGTGTTGGATGAAGAGCGTGGTGTAATCAGGCATAAGTTAAACATTGGAGGATGA 2811 41.55 MDTPSSPDSPTTSAGFETDQLPHTSDNNFPDDDEASVDPHILPLLDHEQEEEEEDGEDLYHDNFLDDYRTMKEHDHYESLGLDDSLEDERDLDQIMQDRRAADIELDTRDARFTNRKLPHLLHDHDSEDDNYRPSKRSRADFRPPAAPRSYDDLDGMQSSPGRSQRENSRDDVPLTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKRFKTFLETYVNPKNENGELEYMRLINEMVLANKCSLEIDYKQFIFAHPNIAIWLADAPQPVLEVMEDVAKKVVFAIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMVRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKMSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSYNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANVDDNSINESQDDVQNSTTPVDPEVLPQDLLKKYITYAKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVIQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLIYLLRELVKNALHFEEIVGGSTSGLTHIDVKLEDLQNKAQEHEIYDLKPFFSSTHFSRANFVLDEERGVIRHKLNIGG 936
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 38089525 38094436 - evm.model.ptg000001l.1143 HCH5g1143 545295
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1143 936 FunFam DNA helicase 477 851 - -
HCH5g1143 936 FunFam DNA helicase 345 395 - -
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 385 399 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 327 344 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 446 457 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 461 472 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 350 362 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 Gene3D - 345 395 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 117 200 - -
HCH5g1143 936 Gene3D - 477 851 IPR027417 -
HCH5g1143 936 MobiDBLite consensus disorder prediction 165 180 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 713 737 - -
HCH5g1143 936 Pfam MCM N-terminal domain 218 311 IPR027925 -
HCH5g1143 936 Pfam MCM AAA-lid domain 744 828 IPR041562 -
HCH5g1143 936 Pfam MCM OB domain 317 444 IPR033762 -
HCH5g1143 936 Pfam MCM P-loop domain 485 707 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 Pfam Mini-chromosome maintenance protein 2 32 155 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 ProSiteProfiles MCM family domain profile. 497 703 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 FunFam DNA helicase 210 314 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 711 737 - -
HCH5g1143 936 SMART mcm 314 829 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 ProSitePatterns MCM family signature. 606 614 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
HCH5g1143 936 Gene3D - 318 443 IPR012340 -
HCH5g1143 936 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 209 886 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER)
HCH5g1143 936 SUPERFAMILY Nucleic acid-binding proteins 220 466 IPR012340 -
HCH5g1143 936 CDD MCM2 500 827 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 1 25 - -
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 598 612 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 626 639 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 677 685 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 650 662 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 538 553 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 MobiDBLite consensus disorder prediction 117 148 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 1 39 - -
HCH5g1143 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 831 IPR027417 -
HCH5g1143 936 Gene3D - 210 314 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0354 HCH-Chr10:2860498 HCH5g1143 HCH-Chr5:38089525 1.90E-91 dispersed
HCH4g1702 HCH-Chr4:19954653 HCH5g1143 HCH-Chr5:38089525 1.30E-51 dispersed
HCH5g1143 HCH-Chr5:38089525 HCH7g0533 HCH-Chr7:4090494 9.30E-91 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1143 K02540 - csv:101219546 1674.83