Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1143 ATGGATACTCCTTCGTCCCCTGATTCTCCGACGACTTCTGCTGGTTTCGAAACAGACCAGCTTCCTCACACTTCCGACAACAACTTTCCTGATGACGATGAAGCTTCCGTTGATCCTCACATTCTTCCCCTTCTCGATCATGAACAAGAAGAAGAAGAAGAAGATGGAGAGGATCTTTATCACGACAATTTCTTGGACGATTATCGGACTATGAAAGAGCATGACCATTACGAGTCATTAGGGCTTGATGATTCTTTAGAAGATGAAAGAGATTTGGATCAAATCATGCAAGATCGACGTGCTGCTGATATTGAACTTGATACTCGCGATGCTCGTTTCACCAATCGCAAGCTTCCTCATTTATTACATGACCATGACTCTGAGGATGACAATTACAGGCCTTCTAAAAGATCAAGGGCCGATTTCAGGCCTCCAGCTGCACCCAGAAGTTATGATGATCTTGATGGTATGCAAAGTTCACCCGGTCGATCCCAGAGAGAAAACTCCCGTGATGATGTTCCCTTGACCGATCATTCTGTTGACGATCAATATGAGGATGAAGATGATGATGAGAATGAGAATGAGATGTATCGTGTTCAAGGCCCACTTAGAGAGCATGTTACTATGGACGCTGTTCGGCGCTTTATAGGCAAACGATTCAAAACTTTTTTGGAAACTTATGTCAATCCAAAGAATGAAAATGGTGAACTTGAATACATGCGCCTCATAAATGAGATGGTTTTAGCTAACAAGTGTAGTTTGGAGATTGATTACAAGCAGTTTATCTTTGCTCATCCAAATATTGCTATCTGGTTGGCTGATGCGCCCCAACCTGTCCTAGAGGTTATGGAAGATGTTGCAAAGAAGGTTGTATTTGCAATACATCCAAACTACAAAAATATTCACCAAAAGATTTATGTCCGCATTAATAATTTGCCAGTCTACGATCAGATTCGGAATATTAGGCAAATCCATTTGAATACCATGGTTCGCATTGGGGGAGTGGTGACCCGACGTTCTGGTGTCTTCCCCCAGTTGCAGCAGGTAAAGTATGATTGTAACAAATGTGGGGCCATATTGGGACCGTTCTTTCAGAATTCTTATTCAGAGGTCAAGGTCGGTTCTTGTCCTGAATGCCAATCAAAGGGACCATTCACCATTAATGTTGAGCAGACTATATATAGGAATTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCAGGTCGACTTCCAAGGTACAAGGAAGTGATACTGTTGAATGATCTAATTGATTGTGCCCGCCCTGGGGAAGAGATTGAGGTTACAGGCATTTACACAAACAATTTTGACTTATCGTTAAATACAAAGAATGGTTTTCCTGTATTTGCCACTGTTGTTGAAGCAAATTATGTCACTAAGAAGCAAGATCTCTTCTCTGCTTACAAACTTACCCAGGAAGACAAAGAGGAGATTGAGAAAATGTCTAAAGACCCTAGAATTGGTGAAAGGATAATCAAGTCCATTGCCCCATCAATTTATGGTCATGAGGACATCAAAACTGCCATAGCTCTTGCAATGTTCGGAGGTCAAGAAAAAAATGTAGAAGGGAAACACCGGTTGCGAGGTGATATCAATGTGCTTCTACTGGGAGATCCTGGCACAGCCAAATCTCAATTTCTCAAGTATGTTGAAAAAACTGGGCATAGGGCAGTGTATACCACAGGAAAAGGAGCTTCAGCTGTAGGACTCACAGCAGCAGTGCACAAGGATCCTGTTACAAGGGAGTGGACCCTTGAAGGAGGGGCCCTCGTATTAGCTGATAGAGGAATTTGTCTTATTGATGAGTTCGACAAGATGAATGATCAGGATAGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAAGCAGGAATAGTCACTTCTCTTCAGGCCCGATGTTCTGTCATTGCTGCTGCCAATCCAGTTGGAGGAAGGTATGACTCCTCAAAAACATTTTCTTATAATGTAGAGTTGACAGATCCTATCATTTCTCGATTTGACATACTCTGTGTTGTTAAGGATGTTGTAGATCCCGTAACAGATGAGATGCTTGCAAAGTTTGTCGTTGATAGTCATTTTAAATCACAACCAAAGGGGGCTAATGTTGATGACAATTCTATAAATGAGTCTCAGGATGATGTTCAAAACTCTACAACACCAGTGGATCCTGAGGTGCTCCCTCAAGATCTGCTGAAGAAATACATTACTTATGCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATCTAGATAAGCTAACACATGTATATGCAGAATTGCGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATCGCAGTTAGGCACATTGAGTCAATGATACGAATGTCTGAAGCACATGCAAGAATGCACCTCAGACAGCATGTCATACAAGAAGACGTTGATATGGCAATTCGTGTATTACTTGATTCTTTCATTTCAACCCAAAAATTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACATTCAAAAAGGATTATAATGAACTGCTAATTTATCTTCTTCGAGAGCTTGTGAAGAATGCACTTCACTTTGAAGAAATTGTAGGAGGATCTACATCGGGGCTAACGCATATTGATGTGAAACTGGAAGACCTGCAGAACAAGGCACAGGAACATGAAATTTATGATCTGAAGCCCTTCTTCAGCAGCACTCATTTTTCAAGAGCTAATTTTGTGTTGGATGAAGAGCGTGGTGTAATCAGGCATAAGTTAAACATTGGAGGATGA 2811 41.55 MDTPSSPDSPTTSAGFETDQLPHTSDNNFPDDDEASVDPHILPLLDHEQEEEEEDGEDLYHDNFLDDYRTMKEHDHYESLGLDDSLEDERDLDQIMQDRRAADIELDTRDARFTNRKLPHLLHDHDSEDDNYRPSKRSRADFRPPAAPRSYDDLDGMQSSPGRSQRENSRDDVPLTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKRFKTFLETYVNPKNENGELEYMRLINEMVLANKCSLEIDYKQFIFAHPNIAIWLADAPQPVLEVMEDVAKKVVFAIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMVRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKMSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSYNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANVDDNSINESQDDVQNSTTPVDPEVLPQDLLKKYITYAKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVIQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLIYLLRELVKNALHFEEIVGGSTSGLTHIDVKLEDLQNKAQEHEIYDLKPFFSSTHFSRANFVLDEERGVIRHKLNIGG 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38089525 38094436 - evm.model.ptg000001l.1143 HCH5g1143 545295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1143 936 FunFam DNA helicase 477 851 - -
HCH5g1143 936 FunFam DNA helicase 345 395 - -
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 385 399 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 327 344 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 446 457 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 461 472 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 350 362 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 Gene3D - 345 395 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 117 200 - -
HCH5g1143 936 Gene3D - 477 851 IPR027417 -
HCH5g1143 936 MobiDBLite consensus disorder prediction 165 180 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 713 737 - -
HCH5g1143 936 Pfam MCM N-terminal domain 218 311 IPR027925 -
HCH5g1143 936 Pfam MCM AAA-lid domain 744 828 IPR041562 -
HCH5g1143 936 Pfam MCM OB domain 317 444 IPR033762 -
HCH5g1143 936 Pfam MCM P-loop domain 485 707 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 Pfam Mini-chromosome maintenance protein 2 32 155 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
HCH5g1143 936 ProSiteProfiles MCM family domain profile. 497 703 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 FunFam DNA helicase 210 314 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 711 737 - -
HCH5g1143 936 SMART mcm 314 829 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 ProSitePatterns MCM family signature. 606 614 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
HCH5g1143 936 Gene3D - 318 443 IPR012340 -
HCH5g1143 936 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 209 886 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER)
HCH5g1143 936 SUPERFAMILY Nucleic acid-binding proteins 220 466 IPR012340 -
HCH5g1143 936 CDD MCM2 500 827 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 1 25 - -
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 598 612 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 626 639 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 677 685 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 650 662 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 PRINTS Mini-chromosome maintenance (MCM) protein family signature 538 553 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH5g1143 936 MobiDBLite consensus disorder prediction 117 148 - -
HCH5g1143 936 MobiDBLite consensus disorder prediction 1 39 - -
HCH5g1143 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 831 IPR027417 -
HCH5g1143 936 Gene3D - 210 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1143 K02540 - - csv:101219546 1674.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0354 HCH-Chr10:2860498 HCH5g1143 HCH-Chr5:38089525 1.90E-91 dispersed
HCH4g1702 HCH-Chr4:19954653 HCH5g1143 HCH-Chr5:38089525 1.30E-51 dispersed
HCH5g1143 HCH-Chr5:38089525 HCH7g0533 HCH-Chr7:4090494 9.30E-91 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0450 . 2 864 Core DNA Replication Machinery Family AT4G14700 60.8 3.0e-287 984.6
HCH8g0450 . 1 864 Core DNA Replication Machinery Family AT4G12620 61.8 6.9e-292 1000.0
HCH4g0661 . 2 361 Core DNA Replication Machinery Family AT2G37560 68.3 3.9e-143 504.6
HCH13g1125 . 1 511 Core DNA Replication Machinery Family AT4G29910 57.9 6.1e-170 594.3
HCH4g0881 . 1 274 Core DNA Replication Machinery Family AT1G26840 66.4 3.5e-97 351.7
HCH7g0032 . 1 807 Core DNA Replication Machinery Family AT1G79150 57.5 2.6e-246 848.6
HCH5g1143 . 4 929 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1352.8
HCH14g1057 . 1 578 Core DNA Replication Machinery Family AT5G46280 80.1 2.2e-268 921.4
HCH7g0533 . 1 843 Core DNA Replication Machinery Family AT2G16440 72.7 0.0e+00 1184.5
HCH10g0354 . 1 737 Core DNA Replication Machinery Family AT2G07690 76.9 0.0e+00 1097.8
HCH14g1202 . 6 829 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1169.8
HCH4g1075 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.3 0.0e+00 1204.9
HCH2g1033 . 39 523 Core DNA Replication Machinery Family AT2G29680 58.8 1.3e-158 556.6
HCH2g1033 . 27 484 Core DNA Replication Machinery Family AT1G07270 59.0 2.0e-142 502.7
HCH5g1013 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 6.7e-260 893.3
HCH11g0249 . 27 821 Core DNA Replication Machinery Family AT3G09660 71.1 0.0e+00 1083.2
HCH4g1702 . 6 474 Core DNA Replication Machinery Family AT2G14050 77.9 5.1e-213 737.6
HCH2g0555 . 6 408 Core DNA Replication Machinery Family AT2G20980 55.8 1.4e-117 419.9
HCH12g0839 . 2 971 Core DNA Replication Machinery Family AT1G77320 50.8 1.8e-265 912.5
HCH4g1324 . 1 199 Core DNA Replication Machinery Family AT1G80190 69.3 2.0e-78 288.9
HCH11g0967 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 9.8e-59 223.0
HCH13g0552 . 1 184 Core DNA Replication Machinery Family AT1G19080 65.8 1.1e-64 243.0
HCH13g0552 . 1 184 Core DNA Replication Machinery Family AT3G55490 65.8 1.1e-64 243.0
HCH7g1637 . 15 162 Core DNA Replication Machinery Family AT5G49010 63.3 4.0e-49 191.4
HCH2g0050 . 11 1542 Core DNA Replication Machinery Family AT5G67100 61.6 0.0e+00 1795.8
HCH6g1471 . 2 621 Core DNA Replication Machinery Family AT1G67630 62.0 1.3e-221 766.1
HCH10g0085 . 1 446 Core DNA Replication Machinery Family AT1G67320 65.3 9.0e-186 646.7
HCH6g1260 . 1 453 Core DNA Replication Machinery Family AT5G41880 64.0 1.3e-175 612.8
HCH14g0101 . 17 1087 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1769.6
HCH11g0564 . 1 441 Core DNA Replication Machinery Family AT2G42120 77.6 9.2e-206 713.0
HCH10g0085 . 1 446 Core DNA Replication Machinery Family AT1G67320 65.3 9.0e-186 646.7
HCH2g1255 . 1 2101 Core DNA Replication Machinery Family AT1G08260 70.9 0.0e+00 2978.3
HCH2g1255 . 24 2208 Core DNA Replication Machinery Family AT2G27120 67.9 0.0e+00 2946.8
HCH2g1306 . 1 938 Core DNA Replication Machinery Family AT5G22010 64.1 1.4e-309 1058.9
HCH6g0944 . 1 332 Core DNA Replication Machinery Family AT1G63160 91.0 7.0e-174 606.7
HCH9g0927 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.9 1.5e-179 625.5
HCH12g0832 . 1 334 Core DNA Replication Machinery Family AT1G21690 80.9 4.0e-153 537.7
HCH13g0142 . 1 354 Core DNA Replication Machinery Family AT1G77470 76.4 4.4e-153 537.7
HCH10g0561 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 3.9e-255 877.5
HCH6g1164 . 33 698 Core DNA Replication Machinery Family AT2G06510 53.0 2.0e-203 705.7
HCH8g1241 . 1 623 Core DNA Replication Machinery Family AT5G08020 71.6 3.1e-257 884.4
HCH6g1164 . 7 731 Core DNA Replication Machinery Family AT5G45400 55.0 4.8e-227 784.6
HCH8g1241 . 1 623 Core DNA Replication Machinery Family AT5G61000 69.3 2.1e-251 865.1
HCH6g1164 . 7 731 Core DNA Replication Machinery Family AT4G19130 58.6 1.1e-233 806.6
HCH8g0012 . 1 359 Core DNA Replication Machinery Family AT5G26680 87.7 1.3e-180 629.4
HCH7g1488 . 1 1110 Core DNA Replication Machinery Family AT1G08840 54.2 2.0e-312 1068.5
HCH2g1211 . 145 781 Core DNA Replication Machinery Family AT1G08130 77.1 1.0e-292 1002.7
HCH2g1211 . 181 781 Core DNA Replication Machinery Family AT1G49250 68.3 1.9e-239 825.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35