Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g1143 | ATGGATACTCCTTCGTCCCCTGATTCTCCGACGACTTCTGCTGGTTTCGAAACAGACCAGCTTCCTCACACTTCCGACAACAACTTTCCTGATGACGATGAAGCTTCCGTTGATCCTCACATTCTTCCCCTTCTCGATCATGAACAAGAAGAAGAAGAAGAAGATGGAGAGGATCTTTATCACGACAATTTCTTGGACGATTATCGGACTATGAAAGAGCATGACCATTACGAGTCATTAGGGCTTGATGATTCTTTAGAAGATGAAAGAGATTTGGATCAAATCATGCAAGATCGACGTGCTGCTGATATTGAACTTGATACTCGCGATGCTCGTTTCACCAATCGCAAGCTTCCTCATTTATTACATGACCATGACTCTGAGGATGACAATTACAGGCCTTCTAAAAGATCAAGGGCCGATTTCAGGCCTCCAGCTGCACCCAGAAGTTATGATGATCTTGATGGTATGCAAAGTTCACCCGGTCGATCCCAGAGAGAAAACTCCCGTGATGATGTTCCCTTGACCGATCATTCTGTTGACGATCAATATGAGGATGAAGATGATGATGAGAATGAGAATGAGATGTATCGTGTTCAAGGCCCACTTAGAGAGCATGTTACTATGGACGCTGTTCGGCGCTTTATAGGCAAACGATTCAAAACTTTTTTGGAAACTTATGTCAATCCAAAGAATGAAAATGGTGAACTTGAATACATGCGCCTCATAAATGAGATGGTTTTAGCTAACAAGTGTAGTTTGGAGATTGATTACAAGCAGTTTATCTTTGCTCATCCAAATATTGCTATCTGGTTGGCTGATGCGCCCCAACCTGTCCTAGAGGTTATGGAAGATGTTGCAAAGAAGGTTGTATTTGCAATACATCCAAACTACAAAAATATTCACCAAAAGATTTATGTCCGCATTAATAATTTGCCAGTCTACGATCAGATTCGGAATATTAGGCAAATCCATTTGAATACCATGGTTCGCATTGGGGGAGTGGTGACCCGACGTTCTGGTGTCTTCCCCCAGTTGCAGCAGGTAAAGTATGATTGTAACAAATGTGGGGCCATATTGGGACCGTTCTTTCAGAATTCTTATTCAGAGGTCAAGGTCGGTTCTTGTCCTGAATGCCAATCAAAGGGACCATTCACCATTAATGTTGAGCAGACTATATATAGGAATTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCAGGTCGACTTCCAAGGTACAAGGAAGTGATACTGTTGAATGATCTAATTGATTGTGCCCGCCCTGGGGAAGAGATTGAGGTTACAGGCATTTACACAAACAATTTTGACTTATCGTTAAATACAAAGAATGGTTTTCCTGTATTTGCCACTGTTGTTGAAGCAAATTATGTCACTAAGAAGCAAGATCTCTTCTCTGCTTACAAACTTACCCAGGAAGACAAAGAGGAGATTGAGAAAATGTCTAAAGACCCTAGAATTGGTGAAAGGATAATCAAGTCCATTGCCCCATCAATTTATGGTCATGAGGACATCAAAACTGCCATAGCTCTTGCAATGTTCGGAGGTCAAGAAAAAAATGTAGAAGGGAAACACCGGTTGCGAGGTGATATCAATGTGCTTCTACTGGGAGATCCTGGCACAGCCAAATCTCAATTTCTCAAGTATGTTGAAAAAACTGGGCATAGGGCAGTGTATACCACAGGAAAAGGAGCTTCAGCTGTAGGACTCACAGCAGCAGTGCACAAGGATCCTGTTACAAGGGAGTGGACCCTTGAAGGAGGGGCCCTCGTATTAGCTGATAGAGGAATTTGTCTTATTGATGAGTTCGACAAGATGAATGATCAGGATAGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAAGCAGGAATAGTCACTTCTCTTCAGGCCCGATGTTCTGTCATTGCTGCTGCCAATCCAGTTGGAGGAAGGTATGACTCCTCAAAAACATTTTCTTATAATGTAGAGTTGACAGATCCTATCATTTCTCGATTTGACATACTCTGTGTTGTTAAGGATGTTGTAGATCCCGTAACAGATGAGATGCTTGCAAAGTTTGTCGTTGATAGTCATTTTAAATCACAACCAAAGGGGGCTAATGTTGATGACAATTCTATAAATGAGTCTCAGGATGATGTTCAAAACTCTACAACACCAGTGGATCCTGAGGTGCTCCCTCAAGATCTGCTGAAGAAATACATTACTTATGCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATCTAGATAAGCTAACACATGTATATGCAGAATTGCGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATCGCAGTTAGGCACATTGAGTCAATGATACGAATGTCTGAAGCACATGCAAGAATGCACCTCAGACAGCATGTCATACAAGAAGACGTTGATATGGCAATTCGTGTATTACTTGATTCTTTCATTTCAACCCAAAAATTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACATTCAAAAAGGATTATAATGAACTGCTAATTTATCTTCTTCGAGAGCTTGTGAAGAATGCACTTCACTTTGAAGAAATTGTAGGAGGATCTACATCGGGGCTAACGCATATTGATGTGAAACTGGAAGACCTGCAGAACAAGGCACAGGAACATGAAATTTATGATCTGAAGCCCTTCTTCAGCAGCACTCATTTTTCAAGAGCTAATTTTGTGTTGGATGAAGAGCGTGGTGTAATCAGGCATAAGTTAAACATTGGAGGATGA | 2811 | 41.55 | MDTPSSPDSPTTSAGFETDQLPHTSDNNFPDDDEASVDPHILPLLDHEQEEEEEDGEDLYHDNFLDDYRTMKEHDHYESLGLDDSLEDERDLDQIMQDRRAADIELDTRDARFTNRKLPHLLHDHDSEDDNYRPSKRSRADFRPPAAPRSYDDLDGMQSSPGRSQRENSRDDVPLTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKRFKTFLETYVNPKNENGELEYMRLINEMVLANKCSLEIDYKQFIFAHPNIAIWLADAPQPVLEVMEDVAKKVVFAIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMVRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKMSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSYNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANVDDNSINESQDDVQNSTTPVDPEVLPQDLLKKYITYAKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVIQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLIYLLRELVKNALHFEEIVGGSTSGLTHIDVKLEDLQNKAQEHEIYDLKPFFSSTHFSRANFVLDEERGVIRHKLNIGG | 936 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 38089525 | 38094436 | - | evm.model.ptg000001l.1143 | HCH5g1143 | 545295 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g1143 | 936 | FunFam | DNA helicase | 477 | 851 | - | - | |
| HCH5g1143 | 936 | FunFam | DNA helicase | 345 | 395 | - | - | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 385 | 399 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 327 | 344 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 446 | 457 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 461 | 472 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 350 | 362 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| HCH5g1143 | 936 | Gene3D | - | 345 | 395 | - | - | |
| HCH5g1143 | 936 | MobiDBLite | consensus disorder prediction | 117 | 200 | - | - | |
| HCH5g1143 | 936 | Gene3D | - | 477 | 851 | IPR027417 | - | |
| HCH5g1143 | 936 | MobiDBLite | consensus disorder prediction | 165 | 180 | - | - | |
| HCH5g1143 | 936 | MobiDBLite | consensus disorder prediction | 713 | 737 | - | - | |
| HCH5g1143 | 936 | Pfam | MCM N-terminal domain | 218 | 311 | IPR027925 | - | |
| HCH5g1143 | 936 | Pfam | MCM AAA-lid domain | 744 | 828 | IPR041562 | - | |
| HCH5g1143 | 936 | Pfam | MCM OB domain | 317 | 444 | IPR033762 | - | |
| HCH5g1143 | 936 | Pfam | MCM P-loop domain | 485 | 707 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH5g1143 | 936 | Pfam | Mini-chromosome maintenance protein 2 | 32 | 155 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| HCH5g1143 | 936 | ProSiteProfiles | MCM family domain profile. | 497 | 703 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH5g1143 | 936 | FunFam | DNA helicase | 210 | 314 | - | - | |
| HCH5g1143 | 936 | MobiDBLite | consensus disorder prediction | 711 | 737 | - | - | |
| HCH5g1143 | 936 | SMART | mcm | 314 | 829 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH5g1143 | 936 | ProSitePatterns | MCM family signature. | 606 | 614 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| HCH5g1143 | 936 | Gene3D | - | 318 | 443 | IPR012340 | - | |
| HCH5g1143 | 936 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 209 | 886 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER) | |
| HCH5g1143 | 936 | SUPERFAMILY | Nucleic acid-binding proteins | 220 | 466 | IPR012340 | - | |
| HCH5g1143 | 936 | CDD | MCM2 | 500 | 827 | - | - | |
| HCH5g1143 | 936 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 598 | 612 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 626 | 639 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 677 | 685 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 650 | 662 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH5g1143 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 538 | 553 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH5g1143 | 936 | MobiDBLite | consensus disorder prediction | 117 | 148 | - | - | |
| HCH5g1143 | 936 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| HCH5g1143 | 936 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 507 | 831 | IPR027417 | - | |
| HCH5g1143 | 936 | Gene3D | - | 210 | 314 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0354 | HCH-Chr10:2860498 | HCH5g1143 | HCH-Chr5:38089525 | 1.90E-91 | dispersed | |
| HCH4g1702 | HCH-Chr4:19954653 | HCH5g1143 | HCH-Chr5:38089525 | 1.30E-51 | dispersed | |
| HCH5g1143 | HCH-Chr5:38089525 | HCH7g0533 | HCH-Chr7:4090494 | 9.30E-91 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g1143 | K02540 | - | csv:101219546 | 1674.83 |