Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1145 ATGACAGACGAGAATGGAAATAACAACGATGAATCCGGACGAGAAAACCAGTTGACAGACCGAAAGATTTCATGGGCTAACCTACGCCGTGTAGACTCACTCAATCTTGAAGCTGGTAGAATGTCAGCCCCTGCTCCTCCTCATCATCCCCATTTTTCTCAGGTGAATTGGAAGACGACTTTGAGTTTGGCATTTCAAAGCGTAGGAGTGGTGTATGGAGACATTGGGACATCTCCATTGTATGTATTTGCAAGCACTTTCACAAATGGAATTGATAACACAGAAGACGTGATAGGAGTTCTTTCACTCATAATCTATACGATAGCACTCATTCCATTACTCAAATATGTGTTCATTGTGTTGTGGGCGAACGATAATGGTGATGGAGGAACCTTTGCTCTTTATTCACTTTTATGTCGATATGCAAAAGTCAGTTTAATTCCAAATCAACAGCCTGAAGATAGAGAGCTGTCTAATTATCAACTGACTTTGCCTTCAAACTTGAGAAGATCTCAAAAGGTTAAGGAAAAGCTTGAGAATAGTAAAACTGCTAAAATTGCTCTTTTCCTTGTTACTATTACGGGTACTTCTATGGTTATTGGAGATGGGGTTCTCACTCCATGTATTTCTGTTCTCTCTGCTGTGAGCGGAATCAAATCACTTGGGACAGACGCAGTTGTGGGGGTATCAGTAGCAATTCTGATACTTCTTTTCTGTATTCAACGTTTTGGAACTGACAAAGTGGGATTCTCGTTTGCTCCAATAATCTTTGTCTGGTTTGGATTCATCGGTGGCATTGGACTCTACAACTTGTTCAAGTATGACCCTGCTGTTTTGAAAGCTTTCAATCCCAAATATATCATTGATTACTTCAAAAGGAATGGCAAGCAAGGATGGATTTCCCTTGGAGGAATCTTTCTCTGCATTACAGGGACTGAGGCCATGTTTGCTGACCTGGGTCACTTCAATGTCCGAGCAATACAAATTAGTTTCTCTTCCATCGTATTTCCTGCTTTATTAACAGCTTACGCTGGGCAAGCTGCATATCTAAGAAAATTCCCTCAAAACGTCTCCAATACTTTCTATGACTCAGTTCCAGATCCTTTGTATTGGCCAACATTTGTGGTGGCTGTAGCAGCATCAATTATAGCAAGTCAAGCAATGATATCAGGAGCATTTTCCATCATTTCTCAATCACTTTCTCTTGGGTGTTTCCCAAGAGTAAAGGTCGTTCATACTTCAGCCAGTTATGAGGGTCAAGTTTATATCCCAGAAATCAACTACCTGCTTATGATTGCATGTGTCATTGTCACTGCAGCATTCAAAACCACTGAAAACATTGGTCATGCTTATGGTATCGCTGTTGTTTCAGTCATGATTATGACCACTTGCATGGTTGCTTTGATAATGTTAGTTATATGGAAAACCAGCATTTGGTGGATTGTTTTATTCTTTTTTGTTTTTGGTTCCATTGAGATCTTATATTTCTCCTCAGTTCTTTACAAATTCACTCAAGGTGGTTTCCTTCCTTTGGTTTTAGCTCTTTTCCTAATGTCAGTAATGACCATTTGGCATTATGTTCACAAGGAAAGATACATGTTTGAGCTCAAAAACAAGGTTTCCAGTGAATATATAGTACAACTTGCAAACAATCCTGACATTAGCCGAATTCCAGGAATAGGACTCCTCTACTCTGAACTTGTTCAAGGTATTCCTCCTATTTTCCCTCACTTCATTTCCAGCATTCCCTCCATCCATTCCGTTGTTGTCTTCGTCTCGATTAAGTCGATTCCGATCAGTAAAGTTATGCCGGAGGAGCGGTTCATGTTTAGGCACGTGGAGCCGAGAGAGTACCGAATGTTCCGTTGTGTGGTAAGGTATGGTTATAAAGACGCCATGCCGGAATCTGCCGAGTTTGAGCGTCAGTTAGTTGATAGGTTGAAGGAATTCATACGCCAAGAACATGTGATGCTTGAAGGAATTCCGGAATATACATCTGGAGTTCAACTTCCAAGCCCAAACCACTCGGGGAAACTTGAAGCAGAAAAAGTAGTAAAAGGTAAGCCATCTTCATCATCGACAGTTCACATTGAAGAATCATTATCAGCTGATGCTAATCCTTCACGGGCTTCATCGGGATCGATCCGATCATTCAAGGCTTCAAAATCAGGGAGTGATTCTTCAAATAGAATAGTGATAGTGACAACAGCTGATCAAGGAGTGGAAGAGGAGATGCAATTTGTGGAGAAAGCAATGAAGAAGGGAGTGATATATCTTTTAGGAGAAGCAGAAGTGATAGCAGAACCAAAATCATCGTTGTTTAAGAAGATGGTGGTGAATTATGGATATAGTTTTTTGAGGAAGAATTTCAGGCAAGGGGAAAATATACTTCACATTCCACACACAAGGCTTCTCAGGGTTGGTATGACATATGAAATATGA 2442 40.5 MTDENGNNNDESGRENQLTDRKISWANLRRVDSLNLEAGRMSAPAPPHHPHFSQVNWKTTLSLAFQSVGVVYGDIGTSPLYVFASTFTNGIDNTEDVIGVLSLIIYTIALIPLLKYVFIVLWANDNGDGGTFALYSLLCRYAKVSLIPNQQPEDRELSNYQLTLPSNLRRSQKVKEKLENSKTAKIALFLVTITGTSMVIGDGVLTPCISVLSAVSGIKSLGTDAVVGVSVAILILLFCIQRFGTDKVGFSFAPIIFVWFGFIGGIGLYNLFKYDPAVLKAFNPKYIIDYFKRNGKQGWISLGGIFLCITGTEAMFADLGHFNVRAIQISFSSIVFPALLTAYAGQAAYLRKFPQNVSNTFYDSVPDPLYWPTFVVAVAASIIASQAMISGAFSIISQSLSLGCFPRVKVVHTSASYEGQVYIPEINYLLMIACVIVTAAFKTTENIGHAYGIAVVSVMIMTTCMVALIMLVIWKTSIWWIVLFFFVFGSIEILYFSSVLYKFTQGGFLPLVLALFLMSVMTIWHYVHKERYMFELKNKVSSEYIVQLANNPDISRIPGIGLLYSELVQGIPPIFPHFISSIPSIHSVVVFVSIKSIPISKVMPEERFMFRHVEPREYRMFRCVVRYGYKDAMPESAEFERQLVDRLKEFIRQEHVMLEGIPEYTSGVQLPSPNHSGKLEAEKVVKGKPSSSSTVHIEESLSADANPSRASSGSIRSFKASKSGSDSSNRIVIVTTADQGVEEEMQFVEKAMKKGVIYLLGEAEVIAEPKSSLFKKMVVNYGYSFLRKNFRQGENILHIPHTRLLRVGMTYEI 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38196589 38199914 - evm.model.ptg000001l.1145 HCH5g1145 545297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1145 813 Pfam K+ potassium transporter C-terminal domain 558 813 IPR053952 -
HCH5g1145 813 MobiDBLite consensus disorder prediction 683 725 - -
HCH5g1145 813 Pfam K+ potassium transporter integral membrane domain 63 546 IPR053951 -
HCH5g1145 813 NCBIfam potassium uptake protein 63 813 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH5g1145 813 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 48 813 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH5g1145 813 MobiDBLite consensus disorder prediction 687 725 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0007 HCH-Chr4:70784 HCH5g1145 HCH-Chr5:38196589 4.40E-201 dispersed
HCH4g0998 HCH-Chr4:6417672 HCH5g1145 HCH-Chr5:38196589 3.50E-237 dispersed
HCH4g0999 HCH-Chr4:6427655 HCH5g1145 HCH-Chr5:38196589 1.50E-243 dispersed
HCH5g1145 HCH-Chr5:38196589 HCH9g0158 HCH-Chr9:943132 6.70E-178 dispersed
HCH11g0989 HCH-Chr11:41444472 HCH5g1145 HCH-Chr5:38196589 1.00E-181 transposed
HCH5g1145 HCH-Chr5:38196589 HCH9g0012 HCH-Chr9:101601 1.10E-185 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1145 K03549 - csv:101205628 1169.45