Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1146 ATGGACTCGAAAAATAACTCCTCTTCAAAGCCAAGGAGAAAGCCACAAGAACAACAGCAGCAACAACAAGAAATGAGGTTTTTAGGGGTGAGAAGAAGGCCATGGGGAAGATATGCTGCTGAAATTAGAGACCCTTCAACCAAAGAAAGGCATTGGCTAGGTACCTTTGACACTGCTGAAGAAGCTGCTTTGGCCTATGACCGTGCCGCCCGCTCCATGCGTGGCTCTAAGGCTCGTACCAATTTTGTCTACTCCGATATGCAGCCCGGCTCCTCCGTCACCTCCATCATTTCCCCTGACGAACCACACCTCGACATCTCGGTTCTCTTCCCGCCTCCACCTTCTGCTGCCGCTACTCTTCCCATTTCCTTTCCACAACACCAAAATGATACCAACCATAATGTTTACTTCAACTGTATCCAGACTGACCCTTTCAGTTCCAGTCCATTTCCTGGCAATGGGTGGCTGCTACCGGATACCAACTCCGGTAGCGGGTCTAATTACCAACCGGTTACAGCTTTCATGGAGGGTGGAATATCTGAGGCGTCTGAGTCTCAGAGTTATGGAGATGACACAGAGCTGCCTCCATTGCCACCAGATGCATCTTCATCATATAACATGGGACAAGGAGTTTGGACAGACACCAACATGTTCGGTTCAAATGGGCATGATTCCTATATGGGCTTTGATTCTAATCAAGCTTTACCACCATTTCCTGATACGAGTACTGATGGATTCGGGTTCGGATTCGGTTCCTCATCTACTTTTTATTGA 774 48.06 MDSKNNSSSKPRRKPQEQQQQQQEMRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMQPGSSVTSIISPDEPHLDISVLFPPPPSAAATLPISFPQHQNDTNHNVYFNCIQTDPFSSSPFPGNGWLLPDTNSGSGSNYQPVTAFMEGGISEASESQSYGDDTELPPLPPDASSSYNMGQGVWTDTNMFGSNGHDSYMGFDSNQALPPFPDTSTDGFGFGFGSSSTFY 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38275820 38276593 - evm.model.ptg000001l.1146 HCH5g1146 545298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1146 257 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1146 257 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1146 257 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1146 257 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677(InterPro)
HCH5g1146 257 MobiDBLite consensus disorder prediction 12 26 - -
HCH5g1146 257 FunFam Ethylene-responsive transcription factor 2 26 84 - -
HCH5g1146 257 Pfam AP2 domain 29 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1146 257 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1146 257 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 176 - -
HCH5g1146 257 CDD AP2 26 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1146 257 MobiDBLite consensus disorder prediction 1 30 - -
HCH5g1146 257 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1075 HCH-Chr1:58522092 HCH5g1146 HCH-Chr5:38275820 7.30E-23 dispersed
HCH4g0055 HCH-Chr4:325647 HCH5g1146 HCH-Chr5:38275820 1.60E-25 dispersed
HCH5g1146 HCH-Chr5:38275820 HCH7g0130 HCH-Chr7:871016 3.10E-20 dispersed
HCH10g1123 HCH-Chr10:40348148 HCH5g1146 HCH-Chr5:38275820 1.50E-37 transposed
HCH7g1111 HCH-Chr7:43780505 HCH5g1146 HCH-Chr5:38275820 5.90E-27 transposed
HCH10g0120 HCH-Chr10:1020500 HCH5g1146 HCH-Chr5:38275820 1.30E-15 wgd
HCH2g0161 HCH-Chr2:12101579 HCH5g1146 HCH-Chr5:38275820 2.70E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33646 PF00847 AP2 2.60E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1146 K09286 - csv:101205393 226.868