Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1180 ATGGAGAAAAATCCACCCCCTGAGAAATCTGAAAGTTTTTCCAAAAACTTCAATAGAATGATTGCCAATTTAGGCTCTCCTAGATTCAATCCTGACGTCATCACCACCGATGCTAAATCGGAAGATGATGATCGAGAAAACTCCATTCTTGAAGACCCTTTTATTGTTTTATCCGAATTCAATACAACCCCGGCTTTGGTTTTCGAAGAAATTGATCGTTTTCTCCAAACCCTAATCAATGCCGGAGATAAATCGAATCCTCCTGACGTTCCCACCTCCGTCCACTGCTTGTTGAAAATGGTGGAGGCCATGATCGCCAAGTATAATTCCAGCAAGTTTCCGACCAAGTTTGGTAGAGATTCCGACAGAGATTCTTCATTTTTCGAAGCTGTCGATAGAATTTCAAAAGTTTCTTTGCAACTTGACGAGTTCCCTCCGGTACCTTCATTCCATCGGACGAGTTCCGTTTTACAAAGAGCGATGTATTTATTGGACGAAGAATTTAACGTCCTTCTTATGAGATCTCGAGAATATGATCAGAAACCTGACCGGAAAACAACAAAGCAATTGTCGTTCAACACGAACAACGAATCGACAGAATCATCGGATTCAGAAACCATTAAAGAAGATCAAGAGTTTCCAACATTCTCAAAGGAGATTGTTTCGAATATGAAACGAATCGCGGTGGCAATGATCAGTGCCGGTTATGAAAAGGAATGTTGCATGACTTATAGCTGCCGGCGGCAAAGCGCATTCAAAGGAACAATGAATAAGGTGGGTTATGAAAGCATAAGCGTAGATGATATTCAAAAAATGCAATGGGAATCTCTTCAATCAGAAATTGATAAATGGATTTGCATCATTAAGAAATGCTCGAATTCTTTATTCCCTAACGAGTGGAAGCTTTGTGAATCTATCTTCTCCGATCATCCGTTAATATCTCAAACCCTATTTAGTAACCTAATGCGTGCAGTTGTGATCAAGCTTCTCAATTTTGCCGACGCCATTGTTTTAACGAAGCGATCGGCTGAGAAGCTTTTCAAATTCATTGATATGTATGAAACCCTACGTGACCTAATTCCAACGATCAATGGTTTTCCGGAAAATTGTAGGATAGACATCATAACGGAAATAGAAGGAGCCAAAGGTGGGATAGGAGAAGCGATAATCGGCATCTTCTACGATCTCGAAAACTCGATAAAAAGCGACAATGCAAGAATTCCAGTTCCTGGAGGAGCAGTTCATCCATTAACACGTTATATAATGAATTACCTAAAATACGCTTGTGAATATAATGAAACCCTAGAACAAGTATTCCATTTTCTCCACCCTAAAATTGAAGACGATCTGCCAGTAAACAACGACGAATTCGACGATGGGTCACCGAGAAAGTCTCAATTAGCTGTTCAAATAGCGATGGTAATGGATTTACTTGATGCGAATCTCACGATGAGATCAAAATTGTATCGTGATCCTTCGCTACGATATATTTTCTTAATGAACAATGGAAGGTATATTGCACAGAAAATCAAAGGATCCAATGGAATGCATGAATTGATGGGAGATAGATGGTGTCGGAAAAGATCGACAAATCTCCGACAATATCATAAAAACTATCAAAGAGAAACATGGAGTAAGGTATTGCGATGCTTGAGTCATGAAGGTCTACAAGTAAATGGGAAAATATCGAAAGCGATTTTGAAGGAAAGGTTTAAAAGCTTCAATGCCATGATTGAAGAGATACATAAGACGCAGAGTTCTTGGGTTGTGAGTGATGATCAACTTCAATCGGAGCTAAGGATTTCGGTGTCGGCGGTGATGATTCCGGCGTATAGATCATTTATGGGGAGGTTTCAGCAGCATATAGATGCAGGAAGACATTTGGAGAAGTACATAAAATATCAACCTGATGATATCGAGGGTTTGATTGATGAACTCTTTGAAGGTAACACTGCTTCAATGGGAAGAAGAAAAGCATAA 1980 39.6 MEKNPPPEKSESFSKNFNRMIANLGSPRFNPDVITTDAKSEDDDRENSILEDPFIVLSEFNTTPALVFEEIDRFLQTLINAGDKSNPPDVPTSVHCLLKMVEAMIAKYNSSKFPTKFGRDSDRDSSFFEAVDRISKVSLQLDEFPPVPSFHRTSSVLQRAMYLLDEEFNVLLMRSREYDQKPDRKTTKQLSFNTNNESTESSDSETIKEDQEFPTFSKEIVSNMKRIAVAMISAGYEKECCMTYSCRRQSAFKGTMNKVGYESISVDDIQKMQWESLQSEIDKWICIIKKCSNSLFPNEWKLCESIFSDHPLISQTLFSNLMRAVVIKLLNFADAIVLTKRSAEKLFKFIDMYETLRDLIPTINGFPENCRIDIITEIEGAKGGIGEAIIGIFYDLENSIKSDNARIPVPGGAVHPLTRYIMNYLKYACEYNETLEQVFHFLHPKIEDDLPVNNDEFDDGSPRKSQLAVQIAMVMDLLDANLTMRSKLYRDPSLRYIFLMNNGRYIAQKIKGSNGMHELMGDRWCRKRSTNLRQYHKNYQRETWSKVLRCLSHEGLQVNGKISKAILKERFKSFNAMIEEIHKTQSSWVVSDDQLQSELRISVSAVMIPAYRSFMGRFQQHIDAGRHLEKYIKYQPDDIEGLIDELFEGNTASMGRRKA 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40549821 40551800 + evm.model.ptg000001l.1180 HCH5g1180 545332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1180 659 FunFam Exocyst subunit Exo70 family protein 110 655 - -
HCH5g1180 659 MobiDBLite consensus disorder prediction 182 209 - -
HCH5g1180 659 SUPERFAMILY Cullin repeat-like 117 648 IPR016159 -
HCH5g1180 659 MobiDBLite consensus disorder prediction 187 201 - -
HCH5g1180 659 Gene3D Exocyst complex component Exo70 114 657 - -
HCH5g1180 659 Pfam Exo70 exocyst complex subunit C-terminal 283 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH5g1180 659 PANTHER EXOCYST COMPLEX PROTEIN EXO70 59 650 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1059 HCH-Chr10:36946672 HCH5g1180 HCH-Chr5:40549821 3.30E-162 dispersed
HCH5g1180 HCH-Chr5:40549821 HCH6g0062 HCH-Chr6:687870 5.40E-93 dispersed
HCH5g1180 HCH-Chr5:40549821 HCH3g0443 HCH-Chr3:2826887 1.90E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1180 K07195 - csv:101220402 940.258