Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1190 ATGATGGAGAATTTCCCATCATTTCTCTCTACTTCATCTCCTTCAATGGGAAGAGGAATATTATTACCAGAATCTAGTTCTTCCAATTCACTGCAGCAACAAATTATGATGGATTCCGAAGCTTACGATCATCGAAACGACGACTTTCAGCGGTACTCAAGCGGATTTCTTAATGTTTCTGTAGAAGAGATGGGGTTTGGACTCGGTGGAAGAAGGTTGAGAGATGAGTTGGTATCATTGAATAGAAGCTTTGGTAATAATACTGAAGTGGATGAAATGGAGAAGATGGAGAAGATGAAGAAGGAAGAGGAAGGAGATTATAATGATAATAATAAGAAGAAGAAGAAAGAAAGAAGCCCAAGATATGCTTTTCAAACAAGGAGCCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGTCAAAAAGCTGTCAAGAACAACAAATTCCCAAGAAGCTACTACAGATGCACACACCAAGGTTGCAAAGTGAAGAAGCAAGTTCAGAGACTGAGCAGAGATGAAGCTGTGGTTGTGACCACTTATGAAGGCATCCATTCTCATCCCATTCAGAAATCCACTGATAACTTTGAGCATATTTTGTCTCAGATGCAAATTTACCCTACTTATACATCATTAATATAA 651 37.94 MMENFPSFLSTSSPSMGRGILLPESSSSNSLQQQIMMDSEAYDHRNDDFQRYSSGFLNVSVEEMGFGLGGRRLRDELVSLNRSFGNNTEVDEMEKMEKMKKEEEGDYNDNNKKKKKERSPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLSRDEAVVVTTYEGIHSHPIQKSTDNFEHILSQMQIYPTYTSLI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40914156 40916032 + evm.model.ptg000001l.1190 HCH5g1190 545342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1190 216 MobiDBLite consensus disorder prediction 89 116 - -
HCH5g1190 216 Gene3D WRKY domain 117 192 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1190 216 Coils Coil 93 113 - -
HCH5g1190 216 ProSiteProfiles WRKY domain profile. 128 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1190 216 SMART WRKY_cls 133 192 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1190 216 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 195 IPR044810 GO:0003700(InterPro)
HCH5g1190 216 FunFam WRKY transcription factor 57 119 193 - -
HCH5g1190 216 MobiDBLite consensus disorder prediction 89 122 - -
HCH5g1190 216 Pfam WRKY DNA -binding domain 134 191 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1190 216 SUPERFAMILY WRKY DNA-binding domain 125 192 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0949 HCH-Chr13:13316151 HCH5g1190 HCH-Chr5:40914156 1.40E-45 dispersed
HCH5g1190 HCH-Chr5:40914156 HCH7g1659 HCH-Chr7:48648061 3.00E-32 dispersed
HCH5g1190 HCH-Chr5:40914156 HCH9g0052 HCH-Chr9:321993 4.40E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33650 PF03106 WRKY 3.80E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1190 - - - 0.0