Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g1200 | ATGTTCGCGAGTTCTCTTTGCAATGCTACCGCTCCATTCTCGGGGGAAGTAATGGACGTAGGAACGATGATGGAACACAAAAGGAATCTTTGCTCTGTTGATGAGAGCAATATCACTTCTCTTACAACTAAACGACACAAGACTGATTTTATCTCCTCTAAGGAGAGGAAAGATAAGCTGGGTGAAAGAATTGTGGCCTTGCAACAACTTGTTTCACCATATGGAAAGACGGATACAGCATCTGTTCTTCTGGAAGCAATGGAGTATATTCAATTCCTTCACGAACAAGTAAAGGTGCTGAGTGCTCCATACCTCCAAAGCACACCCACAGTTAAGCTGCAGGAGCTGGAGCCACACAGCATCAGCCTGAGAAACAGAGGTTTATGCCTTGTTCCAATTTCGTGTACGGCCGGCGTCGCACGCAGCAATGGTGCAGATATCTGGGCTCCTGTGAAGACAACTTCCCCCAGATTTGAGAAGGCCATCTCACCATTCAATTGA | 501 | 46.31 | MFASSLCNATAPFSGEVMDVGTMMEHKRNLCSVDESNITSLTTKRHKTDFISSKERKDKLGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVKLQELEPHSISLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPRFEKAISPFN | 166 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 41440834 | 41445049 | - | evm.model.ptg000001l.1200 | HCH5g1200 | 545352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g1200 | 166 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 47 | 137 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
| HCH5g1200 | 166 | CDD | bHLH_AtbHLH_like | 51 | 101 | IPR045239 | - | |
| HCH5g1200 | 166 | FunFam | Transcription factor bHLH113 family | 44 | 119 | - | - | |
| HCH5g1200 | 166 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 44 | 93 | IPR011598 | GO:0046983(InterPro) | |
| HCH5g1200 | 166 | Gene3D | - | 37 | 119 | IPR036638 | GO:0046983(InterPro) | |
| HCH5g1200 | 166 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 46 | 107 | IPR036638 | GO:0046983(InterPro) | |
| HCH5g1200 | 166 | SMART | finulus | 52 | 99 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH5g1200 | HCH-Chr5:41440834 | HCH6g0741 | HCH-Chr6:41880878 | 1.30E-24 | dispersed | |
| HCH5g1200 | HCH-Chr5:41440834 | HCH8g0731 | HCH-Chr8:44015211 | 1.10E-21 | transposed |
Pathway information