Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1246 ATGTCTGAATCTGATAATTCACCTGCTTTTGATCGACCCAGATTGGTCATTAAGAAGGTTTTGGCCAAACTTCAACATGAGGGAGATGGGGCTGTTGTTAGAAGAGGCATTGGAAGGAATGATTTGAAGAATTTGGATCCGTTTTTGATGTTGGATGATTTTTCTGTGAGTCCACCAGCTGGATTTCCTGATCATCCTCATAGAGGTTTTGAGACTGTCACATATATGTTACAAGGAGGAATTACCCATCAAGATTTTGCTGGGCACAAGGGTACAATCAGAACAGGAGATGTTCAGTGGATGACAGCAGGAAGAGGGATTATTCACTCTGAAATGCCTGCTGGAGAAGGCACTCAAAAGGGTTTGCAGCTTTGGATCAATTTATCTTCCAGAGACAAAATGATGGAGCCAAGATATCAAGAGCTTCCAAGTGAGAGCATTCCAAGAGCAGAGAAAGACGGCGTCGAGGTTCGAGTTATCGCTGGAGAATCAATGGGAGTCCATTCACCGATATATACTCGAACTCCAACAATGTACCTTGATTTCAGTTTGAAACCAAGAGCTCAAATGCATCAAAGCATCCCAGATTCATGGACCTCTTTTGTGTATATAATCGACGGCGAAGGAGTGTTCGGGACCCCGAATTCTTCCAGGGTGGCTGCTCACCATGTCCTGGTTTTAGGACCTGGAGATGGACTGAGTGTGTGGAACAGATCCTCAAAGCAACTGAGATTTGTTCTGATTGCAGGGCAGCCTCTGAATGAAGCAATAGTACAGTATGGACCATTTGTGATGAATACACAATCTGAAATTGATCAAGCAATTGAGGACTACCACTACTCCCAGAATGGCTTTGAAATGGCCAAGTATTGGAGGTCTCAATAA 885 43.73 MSESDNSPAFDRPRLVIKKVLAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAGEGTQKGLQLWINLSSRDKMMEPRYQELPSESIPRAEKDGVEVRVIAGESMGVHSPIYTRTPTMYLDFSLKPRAQMHQSIPDSWTSFVYIIDGEGVFGTPNSSRVAAHHVLVLGPGDGLSVWNRSSKQLRFVLIAGQPLNEAIVQYGPFVMNTQSEIDQAIEDYHYSQNGFEMAKYWRSQ 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44313249 44314854 + evm.model.ptg000001l.1246 HCH5g1246 545398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1246 294 Gene3D Jelly Rolls 27 279 IPR014710 -
HCH5g1246 294 FunFam pirin 27 159 - -
HCH5g1246 294 Pfam Pirin 33 126 IPR003829 -
HCH5g1246 294 PANTHER PIRIN-RELATED 7 294 IPR012093 -
HCH5g1246 294 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
HCH5g1246 294 Gene3D Jelly Rolls 148 253 IPR014710 -
HCH5g1246 294 SUPERFAMILY RmlC-like cupins 14 292 IPR011051 -
HCH5g1246 294 CDD cupin_pirin_N 31 128 - -
HCH5g1246 294 PIRSF Pirin 12 292 IPR012093 -
HCH5g1246 294 CDD cupin_pirin_C 176 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1246 HCH-Chr5:44313249 HCH6g0848 HCH-Chr6:43257759 1.50E-116 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1246 K06911 - csv:101205861 559.296