Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1248 ATGTACCAATCAACCTCTTCCTCTTCTTCTTCACATAAATCGATGGGACCCACCGGCGCTGGTGGTCTCACGCGCTACGGTTCCGCCCCGGGCTCTCTCTTAACTTCAGCCGTTGATTCTGTAATAGGAGGACATCATCCTGACTCCGCCGCCTCCCTCGGATCGCCGCCTTCTTTCGCCGGACACTACTTCTCCTCCTCAGCTGACTCATCCACATCTAACGATCTCAAATCGTCGTCTGGACCTTTGCAGAGGTCGTCGTCGTACGGTATCCATGAATTGGCCTTGGGGGATTTTTCGACGGCGAGAAATTTCAATAGCAATGGCGGCGGTGGCAGCGGTCGACTTTCTTTGTCGTCTTCTTTAGTACGGCAGAGAAGCTCGCCGGCGGGATTTCTTGGTCATCTCACTGCCGCTGAAGCAAACGCAGGATTTTCAGTTACGAGGGAAACTGGCAATTATAGCTCACAAAATGGTTCTGGTGGTCATGGAGTTTCAAGATTGAAGTCCCAATTGAGTTTCACTGGGCAAGATTCTCTTTCTCAAATATCTGAAATCAGTGAAAATGGAGTGGATGGTGTCAACTCCAGTAATGGTATTCAAAGCACCACCCATTCTTTTGTCACAACTAGCTTTGGGATGGACTCATGGGACAGTAACAACTCCATTGTATTTGCTGCCCCTCAGGGTAAACGAGCTAAACATGCTGACGGGGATATATATAATTGTCTCAACGGCTTAGAATCTCAGTTTAGCCTGCCTCAGACAACACTGGAAATGGCAACCGTGGAGAGGCTACTTCAAATTCCTGAAGATTCTGTTCCTTGTAAAATCCGAGCCAAACGTGGTTGTGCCACTCATCCTCGTAGTATTGCTGAAAGGGAGAGGAGAACTAGAATAAGTGGGAAACTGAAGAAGCTTCAGGAGCTTGTTCCCAACATGGATAAGCAAACGAGCTATTCAGACATGTTGGATTTAGCAGTGCAACATATCAAGGGCCTTCAAACTCAGATTCAGAATCTCAACAAAGAAGTAGAGGATTGTACATGTGGTTGCAAACAATCCTCATGA 1071 47.43 MYQSTSSSSSSHKSMGPTGAGGLTRYGSAPGSLLTSAVDSVIGGHHPDSAASLGSPPSFAGHYFSSSADSSTSNDLKSSSGPLQRSSSYGIHELALGDFSTARNFNSNGGGGSGRLSLSSSLVRQRSSPAGFLGHLTAAEANAGFSVTRETGNYSSQNGSGGHGVSRLKSQLSFTGQDSLSQISEISENGVDGVNSSNGIQSTTHSFVTTSFGMDSWDSNNSIVFAAPQGKRAKHADGDIYNCLNGLESQFSLPQTTLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQTQIQNLNKEVEDCTCGCKQSS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44456579 44475613 - evm.model.ptg000001l.1248 HCH5g1248 545400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1248 356 Pfam Helix-loop-helix DNA-binding domain 290 335 IPR011598 GO:0046983(InterPro)
HCH5g1248 356 Coils Coil 324 351 - -
HCH5g1248 356 MobiDBLite consensus disorder prediction 1 27 - -
HCH5g1248 356 SMART finulus 290 340 IPR011598 GO:0046983(InterPro)
HCH5g1248 356 CDD bHLH_AtbHLH_like 289 341 IPR045239 -
HCH5g1248 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 334 IPR011598 GO:0046983(InterPro)
HCH5g1248 356 Gene3D - 285 354 IPR036638 GO:0046983(InterPro)
HCH5g1248 356 MobiDBLite consensus disorder prediction 1 17 - -
HCH5g1248 356 FunFam Transcription factor bHLH130 family 285 354 - -
HCH5g1248 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 66 342 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH5g1248 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 348 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1248 HCH-Chr5:44456579 HCH8g0459 HCH-Chr8:40028731 3.40E-33 dispersed
HCH5g1248 HCH-Chr5:44456579 HCH8g0922 HCH-Chr8:45517757 6.80E-10 transposed
HCH5g1248 HCH-Chr5:44456579 HCH10g0304 HCH-Chr10:2496185 6.80E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33655 PF00010 HLH 9.50E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1248 - - - 0.0