Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g1248 | ATGTACCAATCAACCTCTTCCTCTTCTTCTTCACATAAATCGATGGGACCCACCGGCGCTGGTGGTCTCACGCGCTACGGTTCCGCCCCGGGCTCTCTCTTAACTTCAGCCGTTGATTCTGTAATAGGAGGACATCATCCTGACTCCGCCGCCTCCCTCGGATCGCCGCCTTCTTTCGCCGGACACTACTTCTCCTCCTCAGCTGACTCATCCACATCTAACGATCTCAAATCGTCGTCTGGACCTTTGCAGAGGTCGTCGTCGTACGGTATCCATGAATTGGCCTTGGGGGATTTTTCGACGGCGAGAAATTTCAATAGCAATGGCGGCGGTGGCAGCGGTCGACTTTCTTTGTCGTCTTCTTTAGTACGGCAGAGAAGCTCGCCGGCGGGATTTCTTGGTCATCTCACTGCCGCTGAAGCAAACGCAGGATTTTCAGTTACGAGGGAAACTGGCAATTATAGCTCACAAAATGGTTCTGGTGGTCATGGAGTTTCAAGATTGAAGTCCCAATTGAGTTTCACTGGGCAAGATTCTCTTTCTCAAATATCTGAAATCAGTGAAAATGGAGTGGATGGTGTCAACTCCAGTAATGGTATTCAAAGCACCACCCATTCTTTTGTCACAACTAGCTTTGGGATGGACTCATGGGACAGTAACAACTCCATTGTATTTGCTGCCCCTCAGGGTAAACGAGCTAAACATGCTGACGGGGATATATATAATTGTCTCAACGGCTTAGAATCTCAGTTTAGCCTGCCTCAGACAACACTGGAAATGGCAACCGTGGAGAGGCTACTTCAAATTCCTGAAGATTCTGTTCCTTGTAAAATCCGAGCCAAACGTGGTTGTGCCACTCATCCTCGTAGTATTGCTGAAAGGGAGAGGAGAACTAGAATAAGTGGGAAACTGAAGAAGCTTCAGGAGCTTGTTCCCAACATGGATAAGCAAACGAGCTATTCAGACATGTTGGATTTAGCAGTGCAACATATCAAGGGCCTTCAAACTCAGATTCAGAATCTCAACAAAGAAGTAGAGGATTGTACATGTGGTTGCAAACAATCCTCATGA | 1071 | 47.43 | MYQSTSSSSSSHKSMGPTGAGGLTRYGSAPGSLLTSAVDSVIGGHHPDSAASLGSPPSFAGHYFSSSADSSTSNDLKSSSGPLQRSSSYGIHELALGDFSTARNFNSNGGGGSGRLSLSSSLVRQRSSPAGFLGHLTAAEANAGFSVTRETGNYSSQNGSGGHGVSRLKSQLSFTGQDSLSQISEISENGVDGVNSSNGIQSTTHSFVTTSFGMDSWDSNNSIVFAAPQGKRAKHADGDIYNCLNGLESQFSLPQTTLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQTQIQNLNKEVEDCTCGCKQSS | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 44456579 | 44475613 | - | evm.model.ptg000001l.1248 | HCH5g1248 | 545400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g1248 | 356 | Pfam | Helix-loop-helix DNA-binding domain | 290 | 335 | IPR011598 | GO:0046983(InterPro) | |
HCH5g1248 | 356 | Coils | Coil | 324 | 351 | - | - | |
HCH5g1248 | 356 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
HCH5g1248 | 356 | SMART | finulus | 290 | 340 | IPR011598 | GO:0046983(InterPro) | |
HCH5g1248 | 356 | CDD | bHLH_AtbHLH_like | 289 | 341 | IPR045239 | - | |
HCH5g1248 | 356 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 284 | 334 | IPR011598 | GO:0046983(InterPro) | |
HCH5g1248 | 356 | Gene3D | - | 285 | 354 | IPR036638 | GO:0046983(InterPro) | |
HCH5g1248 | 356 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
HCH5g1248 | 356 | FunFam | Transcription factor bHLH130 family | 285 | 354 | - | - | |
HCH5g1248 | 356 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 66 | 342 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
HCH5g1248 | 356 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 287 | 348 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g1248 | HCH-Chr5:44456579 | HCH8g0459 | HCH-Chr8:40028731 | 3.40E-33 | dispersed | |
HCH5g1248 | HCH-Chr5:44456579 | HCH8g0922 | HCH-Chr8:45517757 | 6.80E-10 | transposed | |
HCH5g1248 | HCH-Chr5:44456579 | HCH10g0304 | HCH-Chr10:2496185 | 6.80E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33655 | PF00010 | HLH | 9.50E-09 | No_clan | HCH | TF |
Pathway information
