Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1259 ATGGGGGCATCTTCTTCTTTGGCATGCTATATTCTATCTATAATCCTCTTCTTTTTATTCTTCCACGAACAAACCCTCAGCCAACAGTCATATCTTGGAAGCGAAGAATGCTCCACTACTAACTCTTCTTCCATATCAAGAGGCTACGTCTGTGAACTTTACCAGAACTCATGTGAATCTTTTTTAACCTTCAGATCAAAACAAAACTATGACACAGCAGTCGAAATAGCAAAGCTCCTTGACTCCAAAGCCACCAATATAACATTTCTTAACAGATTTGGGTCTCCGGATTACCGAATTCCTCAGGACCGATCGGTAATTGTTCCTGTTTCGTGTTCTTGTTCGGGCAGCATCTACCAGCACAATACTCGTTATACTATTAAACGTGGAGATGATTATACGTCAGTAGCAAAGAATATATATCAAGGACTTACCACTTGTCAGGCTTTAATCGGTCAGAATTACTATGAAAGTGACGGTCTTGCAGTGGGAAGAGAGCTACTAGTGCCTGTGAGATGTGCTTGTCCATCTGAAGCTCAGAAAGTTGATGGGGTTATTTCGTTGCTTGTTTATATGGTAGAAAGAAATGACAGTTTCGTATCAATTGCCAAGAAATTTGGGGTTGATGAAGAAAGGATATTAGAAGCAAATAAGATTCCAAATTCTAGCCGTATATACCCTTTTAAACCTATTTTAGTTCCATTGAAGAATGAGACTTGCCGAATTATTTCTCTCTTCTCTTTCTGCTCCAAAACCGACATTTTAGTTGATGGTGATCATAAAAAATCTTCACTATTCTTGGTAACTGCGATAGGTGTTGGAAGTGGATTGGCTTCTATGGTTACACTTCTCATTGGCTACAAAGTGTACCAATTGTTAAGCAAAAGAAGGCGAAAATTTAACAAAGAGAAGTTCTTCAAGCAAAATGGCGGCAGTTTGTTAGAGCAAAAACTTCAGGAAATGGAGAAGAAAGTAAGAGTATTTACAAAAGAAGAACTAGAAAGAGCGACCGACAACTACAACAAAAACCGGTTTCTTGGTCAGGGAGGATATGGGACAGTTTACAAAGGTATTCTCCAAGATGGCACCATAGTTGCTATAAAAAGATCGAAACAAATTGATAAAAAATGGATCGACCAATTTATCAATGAAGTCGTTGTCCTTTCCCAAATCAACCATCGAAATGTTGTCAAGCTTCTAGGTTGTTGTTTAGAGACAGAGTTCCCTTCATTAGTGTATGAGTTTATTTCAAATGGGACGCTTTTACACCATATCCAACAGCAAGATCATGAAGGATTATCTTTTCTTTCATGGGAAAACCGTCTGAAAATCGCTTCAGAAGTTGCCGGTGCGATATCTTACATGCATTCTGCAGCTATAACGCCGATTTTCCATCGAGATATCAAGTCTTCGAACATACTTTTGGATGATAACTACAATGCAAAAGTATCTGATTTTGGGACATCGAGATTTGTACCTAATGAAAAATCTCATTTAACTACAATGGTGCAAGGAACACTTGGCTATATTGATCCGGAGTATTTTAGATCCAGTCAATTCACAGAAAAGAGTGATGTATATAGCTTTGGGGTTTTGATGGTAGAGCTCTTAACAGGAAAACAACCCTTTTCGTTTGCAGAAGATGAGGGCAAGAATCTATTAGAATGCTTCATTTCATTGGAGAAAGATATTCAACTTCTTGAAATTCTTGACAGTTTAGTGGTAAGAGAGGCAAAGATAGATGATGTTTATCTGATTGCAAAGCTAGCTATCAAATGCTTGAGATTGAACGGGAAAAGAAGGCCTACTATGAAACAAGTGTTTTTCGAACTAGAAGGTTTAAGGAAGTCTCAAAATTTATTGGAATTTGTTGAGGAAAATGAGTCGAGTAGGGTTTCTTCTTTGCACAATGCAAGTAGCAGCTACGATCAGCTTACAGATGAAAGCATCATATCTATTGAAATGGAAACCTTATAA 1977 37.78 MGASSSLACYILSIILFFLFFHEQTLSQQSYLGSEECSTTNSSSISRGYVCELYQNSCESFLTFRSKQNYDTAVEIAKLLDSKATNITFLNRFGSPDYRIPQDRSVIVPVSCSCSGSIYQHNTRYTIKRGDDYTSVAKNIYQGLTTCQALIGQNYYESDGLAVGRELLVPVRCACPSEAQKVDGVISLLVYMVERNDSFVSIAKKFGVDEERILEANKIPNSSRIYPFKPILVPLKNETCRIISLFSFCSKTDILVDGDHKKSSLFLVTAIGVGSGLASMVTLLIGYKVYQLLSKRRRKFNKEKFFKQNGGSLLEQKLQEMEKKVRVFTKEELERATDNYNKNRFLGQGGYGTVYKGILQDGTIVAIKRSKQIDKKWIDQFINEVVVLSQINHRNVVKLLGCCLETEFPSLVYEFISNGTLLHHIQQQDHEGLSFLSWENRLKIASEVAGAISYMHSAAITPIFHRDIKSSNILLDDNYNAKVSDFGTSRFVPNEKSHLTTMVQGTLGYIDPEYFRSSQFTEKSDVYSFGVLMVELLTGKQPFSFAEDEGKNLLECFISLEKDIQLLEILDSLVVREAKIDDVYLIAKLAIKCLRLNGKRRPTMKQVFFELEGLRKSQNLLEFVEENESSRVSSLHNASSSYDQLTDESIISIEMETL 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46019383 46022201 + evm.model.ptg000001l.1259 HCH5g1259 545411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1259 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g1259 658 SUPERFAMILY LysM domain 189 234 IPR036779 -
HCH5g1259 658 FunFam Wall-associated receptor kinase 2 313 415 - -
HCH5g1259 658 CDD STKc_IRAK 346 614 - -
HCH5g1259 658 ProSiteProfiles Protein kinase domain profile. 340 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1259 658 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
HCH5g1259 658 Gene3D Transferase(Phosphotransferase) domain 1 416 639 - -
HCH5g1259 658 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 77 618 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH5g1259 658 Gene3D LysM domain 186 241 IPR036779 -
HCH5g1259 658 Pfam LysM domain 125 170 IPR018392 -
HCH5g1259 658 Pfam LysM domain 191 234 IPR018392 -
HCH5g1259 658 SMART serkin_6 340 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1259 658 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1259 658 Gene3D Phosphorylase Kinase; domain 1 319 415 - -
HCH5g1259 658 SUPERFAMILY Protein kinase-like (PK-like) 321 617 IPR011009 -
HCH5g1259 658 SMART LysM_2 124 170 IPR018392 -
HCH5g1259 658 SMART LysM_2 190 234 IPR018392 -
HCH5g1259 658 CDD LysM 190 227 IPR018392 -
HCH5g1259 658 FunFam Wall-associated receptor kinase 2 416 634 - -
HCH5g1259 658 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1259 HCH-Chr5:46019383 HCH8g0250 HCH-Chr8:12147059 1.20E-225 dispersed
HCH8g0296 HCH-Chr8:19197617 HCH5g1259 HCH-Chr5:46019383 2.30E-48 dispersed
HCH5g1259 HCH-Chr5:46019383 HCH5g1262 HCH-Chr5:46375084 3.40E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81528 PF00069 Pkinase 4.00E-52 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1259 - - - 0.0