Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g1301 | ATGGATAAGCGAGTAAATATCGTTGTCGGTTCTCATATTTGGGTTGAAGATTTAGAATCAGTTTGGACTGATGGAATCGTACTGACTATCTATGGGGAAGATGCTGAGATCCAAACTAGTGATGGGAGGCAGGTAGTTGTCAAAATGTCAAATCTATATCCAAGGGATGCAGAAGCTCTTGCTGGTGGAATTGATGACATGACTAGAATGTCATATTTGCATGAGCCAGCATTGCTGCATAATTTGGCTACCAGATACGCGACTAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAACCCATTCCAAAATATTTCAAATCTATATGGTACTCATGTGATGGAACGGTACAAGGGAGCACCATTTGCAGAACTAAAGCCTCATGTTTTTGCAATTGCTGATGTTGCGTATCGGGCTATGATAAATTATGGGCAAAGCAACTCCATTCTAGTAAGTGGTGAAAGTGGGGCTGGTAAGACTGAAACCACCAAAATGCTTATGCGTTACCTTGCATTTTTGGGTGGCCATGCTGCATCTGAAGGACGGACTGTTGAACAACAAGTCTTAGAATCAAATCCAGTTCTTGAAGCTTTTGGCAATGCGAAAACAGTAAGAAACAACAATTCAAGCCGATTTGGGAAATTTGTTGAGATACAATTTGATAAGAAGGGAAGAATATCGGGCGCTGCCATTAGAACTTATCTTCTAGAGAGATCTCGTGTTTGCCAAATTTCAGACCCTGAGAGGAACTACCATTGTTTTTATCTTCTTTGTGCAGCTCCACCACAAGAGAGAGAGAGATATAAGTTGGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGGCTGGTGTGAATGATGCTCATGATTATCTTGCTACAAAGAGAGCTATGGATATTGTTGGAATAGGTGAACACGAACAGGAAGCAATTTTTAGGGTCGTGGCTGCAATTCTACATCTTGGTAATATTGACTTTGCAAAAGGAGAAGAGTCTGATTCATCAGTTGTAAAAAATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAACTTCTTATGTGTGATCAACATGCATTGGAAGAGGCTCTATGCAAGCGCATGATGATTACACCAGAGGAAATTATCCAGAGAAGTCTCGATCCCCTTGGTGCCATAGTTAGCCGGGATGGTTTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTGGATAAAATCAATATTTCCATCGGACAAGATCCTTACTCAAGTTATCTGATTGGAGTCCTTGATATTTACGGTTTTGAAAGCTTTGAAGCTAACAGTTTTGAACAATTTTGCATCAATTACACAAATGAAAAGCTGCAACAACATTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGCACAAGAGGAAATTGATTGGAGCTATATTGAATTTTTTGATAATAAAGATGTCCTTGATCTCATTGAGAAGAAACCAGGTGGAATTATTGCTTTGCTTGATGAAGCTTGCATGTTTCCGAAATCAAATCACGAGACATTTTCAGAAAAGCTATATCAGTCTTTCAAGAATCACAAACGCTTCATCAAGCCAAAACTGTCTCGATCAGATTTTACAATTGTTCATTATGCAGGAGATGTTCAATATCGGTCAGATCAGTTTCTAGACAAAAATAAAGATTATGTTGTGACTGAACATCAATATTTGTTAAGTGCTTCAAAATGTTCTTTTGTTGCTGGCCTTTTCCTTCCTTTTTCTGAGGAAACAGCCAAGTCATCAAAGTTCTCTTCAATTGGCTCTCGTTTTAAGTTACAACTGCAGCAGTTGATGGAAACGATAAATTCGACAGAACCCCATTACATAAGATGTGTGAAGCCAAATAGTTTTCTAAAGCCTGCCATTTTTGAGAATGCTACTGTTATGCAACAATTACGTTCTGGTGGTGTTCTGGAGGCAGTTAGAATAAAGTGTGCAGGATACCCAACTCATAAGACATTTTTTGAATTTTTGACTCGATTTGGAATACTTGCACCCGAGGTATTGGAAGGGGATTTTGAAGAGAAAGTAGCATGTGAGAAGATTCTAGAGAAGATGGGACTTGAAGGTTACCTGATCGGTAAATCAAAAATTTTCCTAAGAGCTGGTCAGATGGCAGAGTTAGACGCACAGAGAACCAGAATACATGGCAACTCTGCCATAGCTATACAAAAGTGTATCAGAACTCTAATTCTTCGTAAAAATTTCATTGCTATGAGAAATGCTTGCATTCGTATACAATCATATTGGAGATGTGTTCTTACTCGTGAATCATATGAGATTGTGAGAAGGGAGATAGCTGCAGTCAAAATTCAGAAGAATACACGTAGATACCTTGCCAGGAAGTTTCATATCAAAATGAGGTTATCTACAGTTGTTCTCCAGGCTGGTTTACGAGCAATGGCTGCTCGGAGTGTGCACAGACGTAGGAGGCAAACTAGGGCTGCAATAGTTATTCAATCTTGCTGGCGTCAGCATAGAACTTTTTCAGACTATAAAAGAATTAAAAAAGCATCAACCATTTCACAATTCAGATTGAGCTCAAGAGCTATTGGTGAAGATCTTGAGAAGCATAGAATGACTGACTTGGAAGAAATGGAAGAGGATCTGATGGTTTTGCCTTATTCATTGCACAATAGTAGTACAGACATTATTGATGAAGCCATTGAAATTATTGCCAAGGAAAATCATGTTTCTCCAAAAGAAATAGAAGAAGCATATTTTATTATTAAAGAGCCCTCCAGTCCCGTTAAAGATGGTGTGAAGGTTGAGACTCTCAGAGCAGAAGTAGCTGGTTTAAAGGCCTTGTTGCAGGTCGAAAGGCAAAGAGCTAACGATTATGAAAAGAAGTATGTGGAAGCACAAAAATCAAGTGAGGATGGACGTAAAAAGCTAGAAGAAAGTGAACGGAAGGTGCATCAACTTCAGGACTCCATAAACAGGATGATACACTGCATGTCAAATCAAATCTCGGAGATGAAAATGATCGTGAATACTTCATCGAGCTCAGAAGCTACATCTAGATATATAACAAATGATTTTCAAATAGATACAATTTCTAGTAGTTCCGATTCTTCGTCAACTGACTCTGATTTCAGCTTTCCCATTCCAAGCCCATCTACGTCAAGTTTCTCTTCATTTAGTCCCAATTCATTTCAGTTGATAGTGCAGGATATTTCGACTTCAGATATCCGAGGATCTGATAGTGACAAGGAGAGCGGATTCTCGGACTACTTCTGA | 3297 | 38.58 | MDKRVNIVVGSHIWVEDLESVWTDGIVLTIYGEDAEIQTSDGRQVVVKMSNLYPRDAEALAGGIDDMTRMSYLHEPALLHNLATRYATNEIYTYTGNILIAINPFQNISNLYGTHVMERYKGAPFAELKPHVFAIADVAYRAMINYGQSNSILVSGESGAGKTETTKMLMRYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEHEQEAIFRVVAAILHLGNIDFAKGEESDSSVVKNEESKFHLHMTAELLMCDQHALEEALCKRMMITPEEIIQRSLDPLGAIVSRDGLAKTIYSRLFDWLVDKINISIGQDPYSSYLIGVLDIYGFESFEANSFEQFCINYTNEKLQQHFNQHVFKMEQEEYAQEEIDWSYIEFFDNKDVLDLIEKKPGGIIALLDEACMFPKSNHETFSEKLYQSFKNHKRFIKPKLSRSDFTIVHYAGDVQYRSDQFLDKNKDYVVTEHQYLLSASKCSFVAGLFLPFSEETAKSSKFSSIGSRFKLQLQQLMETINSTEPHYIRCVKPNSFLKPAIFENATVMQQLRSGGVLEAVRIKCAGYPTHKTFFEFLTRFGILAPEVLEGDFEEKVACEKILEKMGLEGYLIGKSKIFLRAGQMAELDAQRTRIHGNSAIAIQKCIRTLILRKNFIAMRNACIRIQSYWRCVLTRESYEIVRREIAAVKIQKNTRRYLARKFHIKMRLSTVVLQAGLRAMAARSVHRRRRQTRAAIVIQSCWRQHRTFSDYKRIKKASTISQFRLSSRAIGEDLEKHRMTDLEEMEEDLMVLPYSLHNSSTDIIDEAIEIIAKENHVSPKEIEEAYFIIKEPSSPVKDGVKVETLRAEVAGLKALLQVERQRANDYEKKYVEAQKSSEDGRKKLEESERKVHQLQDSINRMIHCMSNQISEMKMIVNTSSSSEATSRYITNDFQIDTISSSSDSSSTDSDFSFPIPSPSTSSFSSFSPNSFQLIVQDISTSDIRGSDSDKESGFSDYF | 1098 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 49021201 | 49063290 | + | evm.model.ptg000001l.1301 | HCH5g1301 | 545453 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g1301 | 1098 | ProSiteProfiles | IQ motif profile. | 783 | 810 | - | - | |
| HCH5g1301 | 1098 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | MobiDBLite | consensus disorder prediction | 1039 | 1067 | - | - | |
| HCH5g1301 | 1098 | Coils | Coil | 942 | 997 | - | - | |
| HCH5g1301 | 1098 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 35 | 784 | IPR027417 | - | |
| HCH5g1301 | 1098 | FunFam | Myosin 2 | 312 | 428 | - | - | |
| HCH5g1301 | 1098 | PANTHER | MYOSIN | 12 | 1019 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| HCH5g1301 | 1098 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 786 | 860 | IPR027417 | - | |
| HCH5g1301 | 1098 | Gene3D | - | 439 | 623 | - | - | |
| HCH5g1301 | 1098 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 311 | 601 | - | - | |
| HCH5g1301 | 1098 | ProSiteProfiles | IQ motif profile. | 831 | 859 | - | - | |
| HCH5g1301 | 1098 | MobiDBLite | consensus disorder prediction | 971 | 991 | - | - | |
| HCH5g1301 | 1098 | Pfam | Myosin N-terminal SH3-like domain | 9 | 49 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | Gene3D | - | 736 | 784 | - | - | |
| HCH5g1301 | 1098 | Gene3D | - | 785 | 835 | - | - | |
| HCH5g1301 | 1098 | Pfam | IQ calmodulin-binding motif | 786 | 801 | IPR000048 | GO:0005515(InterPro) | |
| HCH5g1301 | 1098 | Pfam | IQ calmodulin-binding motif | 832 | 852 | IPR000048 | GO:0005515(InterPro) | |
| HCH5g1301 | 1098 | Pfam | IQ calmodulin-binding motif | 759 | 778 | IPR000048 | GO:0005515(InterPro) | |
| HCH5g1301 | 1098 | ProSiteProfiles | Myosin motor domain profile. | 62 | 732 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | CDD | MYSc_Myo11 | 76 | 720 | IPR036018 | - | |
| HCH5g1301 | 1098 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
| HCH5g1301 | 1098 | ProSiteProfiles | IQ motif profile. | 758 | 787 | - | - | |
| HCH5g1301 | 1098 | Gene3D | - | 667 | 733 | - | - | |
| HCH5g1301 | 1098 | FunFam | Myosin heavy chain | 252 | 307 | - | - | |
| HCH5g1301 | 1098 | SMART | MYSc_2a | 56 | 733 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | ProSiteProfiles | IQ motif profile. | 806 | 835 | - | - | |
| HCH5g1301 | 1098 | Pfam | Myosin head (motor domain) | 65 | 720 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH5g1301 | 1098 | Gene3D | - | 252 | 310 | - | - | |
| HCH5g1301 | 1098 | SMART | iq_5 | 805 | 827 | IPR000048 | GO:0005515(InterPro) | |
| HCH5g1301 | 1098 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515(InterPro) | |
| HCH5g1301 | 1098 | SMART | iq_5 | 830 | 852 | IPR000048 | GO:0005515(InterPro) | |
| HCH5g1301 | 1098 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515(InterPro) | |
| HCH5g1301 | 1098 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH5g1301 | HCH-Chr5:49021201 | HCH7g1382 | HCH-Chr7:46587930 | 0.00E+00 | dispersed | |
| HCH5g1301 | HCH-Chr5:49021201 | HCH8g0621 | HCH-Chr8:42990089 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g1301 | K10357 | - | csv:101220626 | 1699.49 |