Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1304 ATGGCTTCTGGGTCTGGTAATGGTTCAAAATCTCCTTGTGGAGCATGCAAGTTTTTGAGAAGAAAGTGTGCATCTGATTGCATATTTGCTCCATATTTCTGCTCAGAACAAGGCGCTGCGAGATTCGCCGCGATACACAAAGTGTTTGGAGCGAGTAATGTTTCCAAACTTTTGCTTCATGTTCCAGTTGCTGATCGTTATGAGGCAGCCGTTACTATTGCTTATGAAGCTCAGGCAAGGATTCGAGATCCTATTTATGGCTGCGTTGCTCATATTTTTGCCTTGCAACAACAGGTAACAAGCCTCCAAGAGCAACTAATTCAGGCCAAGGCTCAACTAGCAAACCTGATAGATTCAAGGAACAATATAGATCATAATAATCAATGGGCAATATATAATACAAGTGGAGGAGGAATCACTAACTTTCCCACATATCAGATTCACTCAAATTGCTCAGTTTCTCCTCAAAGCTCTCTGGATTTCATTGATTACAGTTTCGATGGAGTTAACAAGAAAGTTCCAATGCAGGCTTTCTCTAAGAATACTACTGCATATAATAATACTGATAACTTGGGTGAGCTTCATGCTCTGGCCCTTCGAATGATGAAAAACTGA 615 40.81 MASGSGNGSKSPCGACKFLRRKCASDCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVADRYEAAVTIAYEAQARIRDPIYGCVAHIFALQQQVTSLQEQLIQAKAQLANLIDSRNNIDHNNQWAIYNTSGGGITNFPTYQIHSNCSVSPQSSLDFIDYSFDGVNKKVPMQAFSKNTTAYNNTDNLGELHALALRMMKN 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49201071 49202392 + evm.model.ptg000001l.1304 HCH5g1304 545456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1304 204 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 141 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
HCH5g1304 204 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
HCH5g1304 204 Pfam Lateral organ boundaries (LOB) domain 12 110 IPR004883 -
HCH5g1304 204 Coils Coil 92 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0441 HCH-Chr1:52819006 HCH5g1304 HCH-Chr5:49201071 2.80E-37 dispersed
HCH4g0533 HCH-Chr4:3467189 HCH5g1304 HCH-Chr5:49201071 1.80E-09 dispersed
HCH5g0079 HCH-Chr5:506163 HCH5g1304 HCH-Chr5:49201071 1.80E-58 dispersed
HCH5g1304 HCH-Chr5:49201071 HCH9g1382 HCH-Chr9:45403445 3.60E-40 dispersed
HCH5g1304 HCH-Chr5:49201071 HCH5g1307 HCH-Chr5:49447591 5.30E-39 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33656 PF03195 LOB 1.00E-36 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1304 K13944 - cit:102621684 242.662