Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g1304 | ATGGCTTCTGGGTCTGGTAATGGTTCAAAATCTCCTTGTGGAGCATGCAAGTTTTTGAGAAGAAAGTGTGCATCTGATTGCATATTTGCTCCATATTTCTGCTCAGAACAAGGCGCTGCGAGATTCGCCGCGATACACAAAGTGTTTGGAGCGAGTAATGTTTCCAAACTTTTGCTTCATGTTCCAGTTGCTGATCGTTATGAGGCAGCCGTTACTATTGCTTATGAAGCTCAGGCAAGGATTCGAGATCCTATTTATGGCTGCGTTGCTCATATTTTTGCCTTGCAACAACAGGTAACAAGCCTCCAAGAGCAACTAATTCAGGCCAAGGCTCAACTAGCAAACCTGATAGATTCAAGGAACAATATAGATCATAATAATCAATGGGCAATATATAATACAAGTGGAGGAGGAATCACTAACTTTCCCACATATCAGATTCACTCAAATTGCTCAGTTTCTCCTCAAAGCTCTCTGGATTTCATTGATTACAGTTTCGATGGAGTTAACAAGAAAGTTCCAATGCAGGCTTTCTCTAAGAATACTACTGCATATAATAATACTGATAACTTGGGTGAGCTTCATGCTCTGGCCCTTCGAATGATGAAAAACTGA | 615 | 40.81 | MASGSGNGSKSPCGACKFLRRKCASDCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVADRYEAAVTIAYEAQARIRDPIYGCVAHIFALQQQVTSLQEQLIQAKAQLANLIDSRNNIDHNNQWAIYNTSGGGITNFPTYQIHSNCSVSPQSSLDFIDYSFDGVNKKVPMQAFSKNTTAYNNTDNLGELHALALRMMKN | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 49201071 | 49202392 | + | evm.model.ptg000001l.1304 | HCH5g1304 | 545456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g1304 | 204 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 8 | 141 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
HCH5g1304 | 204 | ProSiteProfiles | LOB domain profile. | 11 | 113 | IPR004883 | - | |
HCH5g1304 | 204 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 110 | IPR004883 | - | |
HCH5g1304 | 204 | Coils | Coil | 92 | 119 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0441 | HCH-Chr1:52819006 | HCH5g1304 | HCH-Chr5:49201071 | 2.80E-37 | dispersed | |
HCH4g0533 | HCH-Chr4:3467189 | HCH5g1304 | HCH-Chr5:49201071 | 1.80E-09 | dispersed | |
HCH5g0079 | HCH-Chr5:506163 | HCH5g1304 | HCH-Chr5:49201071 | 1.80E-58 | dispersed | |
HCH5g1304 | HCH-Chr5:49201071 | HCH9g1382 | HCH-Chr9:45403445 | 3.60E-40 | dispersed | |
HCH5g1304 | HCH-Chr5:49201071 | HCH5g1307 | HCH-Chr5:49447591 | 5.30E-39 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33656 | PF03195 | LOB | 1.00E-36 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g1304 | K13944 | - | cit:102621684 | 242.662 |