Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1306 ATGGGGCGGGCCACAAGGTGGTTAAAGGGCTTTTTCGGGATGAAGAAAGACAAGAACGACCCATCTGGGAATTCAAATTCAACCGCCGGAAAAGAGAAGAAACGGTGGGGTTTTGCAAAATCCGGTCAGGCAATTCAGAAACCGGCCACCGTCCCGAATCCTGCTTGGCTCGGATCCTACATTTCTGATTCAGAGAATGAGCAGAACAAGCACGCAATTGCGGTCGCTGCCGCCACTGCTGCTGCTGCCGATGCCGCTGTCGCCGCAGCTCAGGCAGCGGTTGCGGTCGTGAGGCTCACGAGCATGGGAAGAGGGTCTTGGTATGGCGGTGGAAGAGATAGATGGGCAGCTGTGAAGATTCAGTCAGTTTTCAAGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTCAAAGGATTGGTCAAATTACAGGCTGTTGTTAGGGGTTATCTGGTAAGGAAAAGGACAGCTGCAACTCTTCAAAGTATGCACGCTCTCATTAGAGTTCAAACTGCGGTTAGGACTCAACGAGCCCGCCGATCTTTCAACAAAGAGAATAGGTTCATTCCGGATATTCGACATCGAAAATCCGCTGATTGGTTCGACGAAAGAAGAAGCGAATTCCATAGCAAGAGGTTGTCTGCATCCTATGAAACTTGTATCAATTCATTGGATGAGAGCCCGAAAATAGTCAAGATCGACACATGCAAGACCAGATCACAGTCCCGAAGATTCATCTCTGCATTATCCGAGTGTGGAGATGATGTCCCTCTCCAAACGATCTCCTCGCCATTGCCGTATCCTAATCGACCTCGCATCTCTGAGCCTGATTCCCTTCACATTCGAGATTTCGAGTGGTGCTTGATGGGTGACGAGTGCAAGTTCCCTACGGCTCATAGCACACCTCGGCTATCAAATTCATTTAGTTCCAATTTGCCACTTACCCCATCAAAGAGTGTGTGCGGGGACAGCTTCTTCCCTCCTTACTTGAACTTTCCAAATTATATGACAAATACTCAATCATTCAAGGCCAAATTGAGGGCTCAAAGTGCCCCAAAGCAAAGGCCAGAACCAGGGTCTAAGAAAAGGCTCTCACTGAATGAAATGATGGCAGCAAGGGATAGCTTCAGCAGTGTAAGAATGCAGAGATCAAGTAACCAAATACAAGAAGGAATAGGTTTTTAG 1182 48.31 MGRATRWLKGFFGMKKDKNDPSGNSNSTAGKEKKRWGFAKSGQAIQKPATVPNPAWLGSYISDSENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSMGRGSWYGGGRDRWAAVKIQSVFKGYLARKALRALKGLVKLQAVVRGYLVRKRTAATLQSMHALIRVQTAVRTQRARRSFNKENRFIPDIRHRKSADWFDERRSEFHSKRLSASYETCINSLDESPKIVKIDTCKTRSQSRRFISALSECGDDVPLQTISSPLPYPNRPRISEPDSLHIRDFEWCLMGDECKFPTAHSTPRLSNSFSSNLPLTPSKSVCGDSFFPPYLNFPNYMTNTQSFKAKLRAQSAPKQRPEPGSKKRLSLNEMMAARDSFSSVRMQRSSNQIQEGIGF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49328618 49330340 - evm.model.ptg000001l.1306 HCH5g1306 545458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1306 393 ProSiteProfiles IQ motif profile. 161 190 - -
HCH5g1306 393 Gene3D - 91 137 - -
HCH5g1306 393 Gene3D - 138 187 - -
HCH5g1306 393 Pfam IQ calmodulin-binding motif 140 154 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 Pfam IQ calmodulin-binding motif 114 134 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 ProSiteProfiles IQ motif profile. 137 164 - -
HCH5g1306 393 SMART iq_5 135 156 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 SMART iq_5 160 182 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 SMART iq_5 112 134 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 PANTHER IQ-DOMAIN 5-RELATED 6 383 - -
HCH5g1306 393 ProSiteProfiles IQ motif profile. 113 141 - -
HCH5g1306 393 MobiDBLite consensus disorder prediction 343 362 - -
HCH5g1306 393 MobiDBLite consensus disorder prediction 12 44 - -
HCH5g1306 393 Pfam Protein of unknown function (DUF4005) 300 379 IPR025064 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1306 HCH-Chr5:49328618 HCH8g0696 HCH-Chr8:43669908 3.20E-93 dispersed
HCH5g1306 HCH-Chr5:49328618 HCH4g1441 HCH-Chr4:10632509 1.40E-160 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1306 - - - 0.0