Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1306 ATGGGGCGGGCCACAAGGTGGTTAAAGGGCTTTTTCGGGATGAAGAAAGACAAGAACGACCCATCTGGGAATTCAAATTCAACCGCCGGAAAAGAGAAGAAACGGTGGGGTTTTGCAAAATCCGGTCAGGCAATTCAGAAACCGGCCACCGTCCCGAATCCTGCTTGGCTCGGATCCTACATTTCTGATTCAGAGAATGAGCAGAACAAGCACGCAATTGCGGTCGCTGCCGCCACTGCTGCTGCTGCCGATGCCGCTGTCGCCGCAGCTCAGGCAGCGGTTGCGGTCGTGAGGCTCACGAGCATGGGAAGAGGGTCTTGGTATGGCGGTGGAAGAGATAGATGGGCAGCTGTGAAGATTCAGTCAGTTTTCAAGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTCAAAGGATTGGTCAAATTACAGGCTGTTGTTAGGGGTTATCTGGTAAGGAAAAGGACAGCTGCAACTCTTCAAAGTATGCACGCTCTCATTAGAGTTCAAACTGCGGTTAGGACTCAACGAGCCCGCCGATCTTTCAACAAAGAGAATAGGTTCATTCCGGATATTCGACATCGAAAATCCGCTGATTGGTTCGACGAAAGAAGAAGCGAATTCCATAGCAAGAGGTTGTCTGCATCCTATGAAACTTGTATCAATTCATTGGATGAGAGCCCGAAAATAGTCAAGATCGACACATGCAAGACCAGATCACAGTCCCGAAGATTCATCTCTGCATTATCCGAGTGTGGAGATGATGTCCCTCTCCAAACGATCTCCTCGCCATTGCCGTATCCTAATCGACCTCGCATCTCTGAGCCTGATTCCCTTCACATTCGAGATTTCGAGTGGTGCTTGATGGGTGACGAGTGCAAGTTCCCTACGGCTCATAGCACACCTCGGCTATCAAATTCATTTAGTTCCAATTTGCCACTTACCCCATCAAAGAGTGTGTGCGGGGACAGCTTCTTCCCTCCTTACTTGAACTTTCCAAATTATATGACAAATACTCAATCATTCAAGGCCAAATTGAGGGCTCAAAGTGCCCCAAAGCAAAGGCCAGAACCAGGGTCTAAGAAAAGGCTCTCACTGAATGAAATGATGGCAGCAAGGGATAGCTTCAGCAGTGTAAGAATGCAGAGATCAAGTAACCAAATACAAGAAGGAATAGGTTTTTAG 1182 48.31 MGRATRWLKGFFGMKKDKNDPSGNSNSTAGKEKKRWGFAKSGQAIQKPATVPNPAWLGSYISDSENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSMGRGSWYGGGRDRWAAVKIQSVFKGYLARKALRALKGLVKLQAVVRGYLVRKRTAATLQSMHALIRVQTAVRTQRARRSFNKENRFIPDIRHRKSADWFDERRSEFHSKRLSASYETCINSLDESPKIVKIDTCKTRSQSRRFISALSECGDDVPLQTISSPLPYPNRPRISEPDSLHIRDFEWCLMGDECKFPTAHSTPRLSNSFSSNLPLTPSKSVCGDSFFPPYLNFPNYMTNTQSFKAKLRAQSAPKQRPEPGSKKRLSLNEMMAARDSFSSVRMQRSSNQIQEGIGF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49328618 49330340 - evm.model.ptg000001l.1306 HCH5g1306 545458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1306 393 ProSiteProfiles IQ motif profile. 161 190 - -
HCH5g1306 393 Gene3D - 91 137 - -
HCH5g1306 393 Gene3D - 138 187 - -
HCH5g1306 393 Pfam IQ calmodulin-binding motif 140 154 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 Pfam IQ calmodulin-binding motif 114 134 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 ProSiteProfiles IQ motif profile. 137 164 - -
HCH5g1306 393 SMART iq_5 135 156 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 SMART iq_5 160 182 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 SMART iq_5 112 134 IPR000048 GO:0005515(InterPro)
HCH5g1306 393 PANTHER IQ-DOMAIN 5-RELATED 6 383 - -
HCH5g1306 393 ProSiteProfiles IQ motif profile. 113 141 - -
HCH5g1306 393 MobiDBLite consensus disorder prediction 343 362 - -
HCH5g1306 393 MobiDBLite consensus disorder prediction 12 44 - -
HCH5g1306 393 Pfam Protein of unknown function (DUF4005) 300 379 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1306 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1306 HCH-Chr5:49328618 HCH8g0696 HCH-Chr8:43669908 3.20E-93 dispersed
HCH5g1306 HCH-Chr5:49328618 HCH4g1441 HCH-Chr4:10632509 1.40E-160 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44