Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1307 ATGACTAGCTCTGGTTCTCCTTGTGGAGCTTGCAGGTTCTTGAGAAGAAAATGCATCAATGGATGCATTTTTGCGCCTTACTTTTGCCATGAACAGGGCACCGATCACTTCTCCGCCATCCACAAAGTTTTCGGTGCCAGTAATGTCTCCAAGCTCCTCGCCCACCTTCCTGTCAGCCACCGCGGTGCAGCTGCAGTGACGATCTCATATGAAGCTCAAGCTAGGCTTCTGGATCCCATTTATGGCTGCGTCTCCCATATTTTCGCCCTTCAACAACAGGTTGTTCATCTGCAGGCTCAGCTAGCTTATCTCAAAGAACAAGCAACTGCTCAAATTCTTTTCAGCACAAGAAACTCTTGTGAATTACTGCCTTGTGACGAACCATTTATACAAGATCTCCAAACTTGGTTTCAGACTGAATTCGATCAGAACCTCGGAATCAACGAACCTGAAAATTTGCCATACTGTGAGAAAAGCGTCTTTGTGGATTCAAATCTGGCGGGAATGTACAATGGAAATTCGGTGATTTCACAAGAAAATGTTTCGTATGAAGACATTTTTTGCTCGATTTCTTCACTTGATATACAGATAAACAACAAGCTTCGGACACTCAGAGATGCTGGTGACCTTATGTCGGTGATTTTAGGTTAA 651 44.09 MTSSGSPCGACRFLRRKCINGCIFAPYFCHEQGTDHFSAIHKVFGASNVSKLLAHLPVSHRGAAAVTISYEAQARLLDPIYGCVSHIFALQQQVVHLQAQLAYLKEQATAQILFSTRNSCELLPCDEPFIQDLQTWFQTEFDQNLGINEPENLPYCEKSVFVDSNLAGMYNGNSVISQENVSYEDIFCSISSLDIQINNKLRTLRDAGDLMSVILG 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49447591 49448465 - evm.model.ptg000001l.1307 HCH5g1307 545459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1307 216 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
HCH5g1307 216 Coils Coil 87 107 - -
HCH5g1307 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 117 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
HCH5g1307 216 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0078 HCH-Chr5:500804 HCH5g1307 HCH-Chr5:49447591 5.60E-51 dispersed
HCH5g1307 HCH-Chr5:49447591 HCH9g1382 HCH-Chr9:45403445 1.00E-37 dispersed
HCH5g1304 HCH-Chr5:49201071 HCH5g1307 HCH-Chr5:49447591 5.30E-39 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33657 PF03195 LOB 4.60E-35 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1307 K13945 - vvi:100266975 223.016