Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1316 ATGGAAACACGTACTGTTTTTCATTTCCATAATAATCAAGAACTTGTATCACTTGATCCTCTCTTTCGCCACCTTGAAAATTTCTTATGGAATGACAGTTTTCTAGACGAACCAAATTTTATGGTCCCATTTGACTTTAATAATCACTACTCCGAAAAACTATTACTCTCCGATATGATTTCAAAGAAAGCAGTCGCCGTAGGAGGGACGCCGGATTCCAGTTCTTGTTCTTCTCCTGTGCTAATTAAGGAAGAAGTAAGTTTGAGTGAGGAGCCAATGAAGCAAAAAACTTATAGAGGAGTAAGGCGGCGGCCGTGGGGGAAGTATGCGGCGGAGATAAGAGATTCCACCCGGAAAGGAATTAGAGTTTGGTTGGGGACATTTGACAGTGCAGAGGCAGCTGCTTTGGCTTACGACCAAGCTGCATTTTCCATGAGAGGGTCTCTAGCAATCCTTAATTTTCCAGAGGAAGTTGTCCGAGAATCGCTCCGAGAAATGAAATATCAGTGGGAGGACGGATGCTCGCCGGTGCTGACACTAAAACGAAAGTACTCGATGAGGAAGAAGAAGATGGTAGAAGTTGAGAAAGAGAAGAAGATGAAAAACAAGACTACGATGGTTTTTCAGGATTTGGGTGTTGAGTATTTGGAAGAACTTCTGAGTTTGACTTCTTGA 675 42.67 METRTVFHFHNNQELVSLDPLFRHLENFLWNDSFLDEPNFMVPFDFNNHYSEKLLLSDMISKKAVAVGGTPDSSSCSSPVLIKEEVSLSEEPMKQKTYRGVRRRPWGKYAAEIRDSTRKGIRVWLGTFDSAEAAALAYDQAAFSMRGSLAILNFPEEVVRESLREMKYQWEDGCSPVLTLKRKYSMRKKKMVEVEKEKKMKNKTTMVFQDLGVEYLEELLSLTS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49952266 49952940 - evm.model.ptg000001l.1316 HCH5g1316 545468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1316 224 FunFam Ethylene-responsive transcription factor 2 96 156 - -
HCH5g1316 224 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1316 224 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1316 224 SUPERFAMILY DNA-binding domain 97 156 IPR016177 GO:0003677(InterPro)
HCH5g1316 224 CDD AP2 98 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1316 224 SMART rav1_2 97 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1316 224 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1316 224 Gene3D AP2/ERF domain 96 157 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g1316 224 PANTHER DNA-BINDING DOMAIN 84 189 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
HCH5g1316 224 Pfam AP2 domain 98 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0091 HCH-Chr5:572962 HCH5g1316 HCH-Chr5:49952266 1.90E-45 dispersed
HCH5g1316 HCH-Chr5:49952266 HCH6g1505 HCH-Chr6:48614265 1.10E-45 dispersed
HCH5g1315 HCH-Chr5:49887836 HCH5g1316 HCH-Chr5:49952266 7.00E-22 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33659 PF00847 AP2 1.20E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1316 K14516 - csv:101205053 207.994