Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1320 ATGGAAGAAGTTGAAGAAGCTAACAAAGCAGCGGTTGAGAGCTGCCACAGAGTGTTAAGTCTGTTGACGACACAACCACAAGATCAGACAAATTTGAGAAATTTAATGGTGGAAACTGGGGAGGCTGTTTTTAAGTTTAGGAAAGTTGTTTCTCTTCTTAATAATGGATTGGGTCATGCCAGGGTCAGAAAGCTCAAGAAATTTCATCCTGCCCCCTTTCCCCAAACCATCTTCTTAGATCCCCAGCCCAAAACTTTGCAGCTTGATTCTCTTTGTTTGAGAAACCCATCTTGGGATTTAACTTCAAATGGGAAAAATCCATTCCAACAAGCACAATCTACCGACTACCATCATTTCCTTCAACAACAACAGAACAGGTTGTTGATTCAGCAGCAGCAGCAGATGAATCCTAAAGCAGAAATTATGTATCATAGGAGCAATAGTGGCAATGGCTTAAATCTAAATTTTGATAGCTCTAGCTGTACACCTACTATGTCATCTACTAGGTCTTTTATTTCTTCCTTGAGCATTGATGGGAGCGTGGCGAACTTGGATCGGAGTTCCTTCCATTTGATCGAAGCTCCTCGTTCTTCTCATCAGAATTCACATCATAAAAGGAAGTGCACTGGAAGAGCGGATGATGGCAGTGATAAATGTGGTAGCAGTGGTAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAACGATCCATCAAGGTACCGGCAATAAGTAACAAGCTTGCAGATATTCCTCCGGATGATTACTCATGGAGGAAATATGGGCAGAAGCCTATCAAAGGTTCTCCTCATCCCAGGGGATACTATAAGTGCAGCAGCATGAGAGGTTGCCCAGCAAGAAAACATGTTGAGAGGTGTCTAGAAGAACCTTCAATGCTCATTGTTACATATGAAGGCGAACACAACCATCCCAGAATACCTTCTCAATCTGCAAATACTTGA 963 42.26 MEEVEEANKAAVESCHRVLSLLTTQPQDQTNLRNLMVETGEAVFKFRKVVSLLNNGLGHARVRKLKKFHPAPFPQTIFLDPQPKTLQLDSLCLRNPSWDLTSNGKNPFQQAQSTDYHHFLQQQQNRLLIQQQQQMNPKAEIMYHRSNSGNGLNLNFDSSSCTPTMSSTRSFISSLSIDGSVANLDRSSFHLIEAPRSSHQNSHHKRKCTGRADDGSDKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQSANT 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50115127 50117176 - evm.model.ptg000001l.1320 HCH5g1320 545472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1320 320 ProSiteProfiles WRKY domain profile. 247 313 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1320 320 Gene3D WRKY domain 238 313 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1320 320 MobiDBLite consensus disorder prediction 196 223 - -
HCH5g1320 320 Pfam Plant zinc cluster domain 205 250 IPR018872 -
HCH5g1320 320 SUPERFAMILY WRKY DNA-binding domain 250 312 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1320 320 Pfam WRKY DNA -binding domain 254 311 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1320 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 316 IPR044810 GO:0003700(InterPro)
HCH5g1320 320 SMART WRKY_cls 252 312 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g1320 320 MobiDBLite consensus disorder prediction 207 223 - -
HCH5g1320 320 FunFam WRKY transcription factor 65 236 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0602 HCH-Chr12:3532882 HCH5g1320 HCH-Chr5:50115127 2.40E-47 dispersed
HCH5g0068 HCH-Chr5:412196 HCH5g1320 HCH-Chr5:50115127 7.00E-108 dispersed
HCH5g0391 HCH-Chr5:2563894 HCH5g1320 HCH-Chr5:50115127 1.70E-35 dispersed
HCH5g1320 HCH-Chr5:50115127 HCH8g1073 HCH-Chr8:46622608 4.80E-39 dispersed
HCH5g1320 HCH-Chr5:50115127 HCH14g0304 HCH-Chr14:31675357 3.80E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33660 PF03106 WRKY 3.00E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1320 - - - 0.0