Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1321 ATGAAGCTCACACAAATGGAAGTAATCAATGGCCACAGGCCTCTTTCTCAACCACCTATTGCCCTTGAACCCAGCTGGGATTCTGGTCTCCCCTTTTCTTCTTCTTCTACTTCCATTAGTATTAATCCTCCCATCTTCCATAACCAGGCCTTCGACTTGGACTCTGACCACCTCCCAAGTTGGCTCGATCTCATTGCTGACATGCCCGAATCATCCATGCAGCCACCGCCGGATGAGATAATTCAAGTTCATGCAGAGAATGGAATAATAAAAGTTGGCCTTGATCATGATAATCATGATTATGGCTTAACCCTGCTCAGCCTCCTTTTCGAGTCTGCGGTCGCCATATCGGTCGATAACCTGACAGCGGCACACCTAATGCTTCTCCAGCTAACGCAAATGGTATCGCCTTATGGACAATCAAGCGCAGAGCGCGTAGTTTCCTATTTCGCCAAAGCCATGGATAGTAGAGTCTTAAACTCCTTTTTAGGTATTTGCTCTCCTTTCATCAACTACAAGACCCTTCACAATTCCTTCACTCTTTTTAACAACATTTCCCCATTCATAAAATTTGCTCATTTCGTTTCTAATCAAGCAATCCTCGAAGCCTTCTCCTGTAACAATCTTCTTCATATTATCGACCTTGATATCATGCAAGGCATGCAATGGCCATCTCTACTCCATGCATTAGCCATGAGAATCGACAGCGGCCCTTGTCACGTGAGAATAACCGCTATGGGAGCCTCCATGGAGCTTCTGGTGGAGACTGGGAAACGGCTCTCGGATATTGCTCAGCAATTGGGAATCTCTTTCGAGTACCATCCCATCGCTGGAAAGCTGGGAAAAATATATGCAGCATCTGAAGTGGAACTCCGAAGGGGAGAGATTTTAGCTGTGAATTGGGTGCAGCACTGTCTTTACGACGCAATCGGATCCGATTGGAAGACGATTGGATTCATTCAACAATTAAGTCCTAAGATTTTCACGATGGTAGAGCAAGAAATGTGTCATGGAGGTTCATTCTTGGACCGTTTTGTGGGATCTCTCCATTACTATTCTTCGATTTTCGACTCTCTAGGAGCTTGCTTGAGTAGTAGTGAAAGTGATGAGAGGAATAAAGTGGAGAATTGCCATCTCCATAGGGAAATCCATAATATATTGTCAATAGGAGGGCCGTGGCGAAGTGGAGAAGAGAAATTTAGGCAATGGAGAAGTGAATTGAGAAAGTATTTGATGGAAGTCCCAATGAGTGAGAACGCTATGGCTCAAGCACGGCTGATGCTTAATATGTTCCCTAAAAATCAAGGGTATAGCCTTGCGCAAGGGGAATGTGGGACGCTCAAGCTTGGCTGGAAAGATACTTGTTTGTATACTGCTTCTGCATGGACTACTTTCCCTCCCAATAACTTACCTCCACGCCAATAG 1425 44.98 MKLTQMEVINGHRPLSQPPIALEPSWDSGLPFSSSSTSISINPPIFHNQAFDLDSDHLPSWLDLIADMPESSMQPPPDEIIQVHAENGIIKVGLDHDNHDYGLTLLSLLFESAVAISVDNLTAAHLMLLQLTQMVSPYGQSSAERVVSYFAKAMDSRVLNSFLGICSPFINYKTLHNSFTLFNNISPFIKFAHFVSNQAILEAFSCNNLLHIIDLDIMQGMQWPSLLHALAMRIDSGPCHVRITAMGASMELLVETGKRLSDIAQQLGISFEYHPIAGKLGKIYAASEVELRRGEILAVNWVQHCLYDAIGSDWKTIGFIQQLSPKIFTMVEQEMCHGGSFLDRFVGSLHYYSSIFDSLGACLSSSESDERNKVENCHLHREIHNILSIGGPWRSGEEKFRQWRSELRKYLMEVPMSENAMAQARLMLNMFPKNQGYSLAQGECGTLKLGWKDTCLYTASAWTTFPPNNLPPRQ 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50121650 50123074 - evm.model.ptg000001l.1321 HCH5g1321 545473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1321 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 86 462 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH5g1321 474 Pfam GRAS domain family 106 463 IPR005202 -
HCH5g1321 474 ProSiteProfiles GRAS family profile. 96 463 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1321 HCH-Chr5:50121650 HCH9g0872 HCH-Chr9:6250684 2.00E-94 dispersed
HCH5g1321 HCH-Chr5:50121650 HCH9g0424 HCH-Chr9:2657757 1.60E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33661 PF03514 GRAS 6.30E-98 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1321 K27742 - csv:101206324 555.829