Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g1322 | ATGGATTCGGCGAGAAGTTGGTTTCATAAGCTTCAACCAAGAGATAAATTGAGAGGTTCGACGAAGAAGAAGGATCCTCTTTGTGGAGAAAATGAGGATTCAATTGAACAAACTGATGAAGAAGCTCTTTCCAATATCACAAAGCAGAAAGTTGCTGCGGCAAAGCAGTATATTGAAAATCATTACAAGGAGCAAATGAAAAATTTGCAAGAGAGAAAGGAACGACGAAATACATTGGAAAAGAAGTTGGCCGATGCTGATGTTTCTGAGGAAGATCAAAACAATTTACTTAAATTTTTAGAAAAGAAGGAAACTGAATACATGCGTCTCCAAAGACACAAAATGGGTGTTGATGATTTTGAATTACTTACAATTATTGGGAAGGGCGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAAGTGTATGCAATGAAAAAACTTAAAAAATCAGAGATGCTTCGAAGGGGGCAGGTTGAGCATGTAAAAGCCGAAAGAAATCTGCTTGCTGAAGTTGACAGCAATTGCATCGTCAAGCTTTACTGTTCTTTTCAAGATGATGATTACCTTTATCTTATTATGGAGTATCTCCCTGGTGGAGATATGATGACTTTACTCATGAGAAAAGATACTCTGACTGAGGATGAAGCAAGGTTTTATGTTGGAGAAATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCACAGAGATATTAAGCCGGACAACTTGCTACTTGATAGATTTGGACACTTGAGACTCTCTGACTTTGGACTTTGTAAGCCATTAGATTGTAGTACGCTCCAAGAACAAGATTTCGCTGTAGTGAACACCCGTAATGGGGCGGCTGGAGGACAGACCGATGAACGCTCTGGAGCTCCTACTCGCACTCAACAAGAGCAACTACAACATTGGCAGAAGAATAGGAGAATGCTTGCCTTTTCCACAGTTGGTACACCAGATTATATTGCTCCAGAGGTTCTGTTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTATCCACCATTTTACTCTGATGATCCAATGTCAACATGCCGGAAGATAGTAAACTGGAGAACTCATTTGAAGTTTCCTGATGAAGCAAAGCTATCTTCTGGAGCGAAAGATATCATCAGTAAACTATTATGCAATGTGAACCAGAGACTGGGGTCAAATGGCGTAGATGAAATTAAGGCGCATCCATGGTTTCAAGGTATCGAATGGGAAAGGCTATATCAGATGGAAGCTGCATTTGTACCTGAGGTTAAGGATGATCTTGATACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCTCATAGCAATACTTCTTCTAAAACTGGTCCTTGGAGGAAGATGCTGTCATCTAAGGATATCAACTTCGTTGGGTACACTTACAAGAACTTCGAAATTGTGAATGATTATCAATTGCCAGGGATGGCTGAATTGAAGAAAAAATGCAGCAAACCGGCTAGACCGTCCATCAAGTCACTCTTTGATGGCGAGTCAGAGGCATCCTGTAATAATAGTCAACCCACCGAAGGTAGTTTTTTAAACCAATTGCCGCCGTTTCCACTGGATGCATCTGAAAAGAGGAAACAGTCTTTGTGA | 1665 | 40.06 | MDSARSWFHKLQPRDKLRGSTKKKDPLCGENEDSIEQTDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRNTLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDRFGHLRLSDFGLCKPLDCSTLQEQDFAVVNTRNGAAGGQTDERSGAPTRTQQEQLQHWQKNRRMLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSSGAKDIISKLLCNVNQRLGSNGVDEIKAHPWFQGIEWERLYQMEAAFVPEVKDDLDTQNFEKFEESDSHSNTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPARPSIKSLFDGESEASCNNSQPTEGSFLNQLPPFPLDASEKRKQSL | 554 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 50162037 | 50165357 | - | evm.model.ptg000001l.1322 | HCH5g1322 | 545474 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g1322 | 554 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 239 | 251 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH5g1322 | 554 | Pfam | Protein kinase C terminal domain | 440 | 484 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1322 | 554 | Pfam | Protein kinase domain | 121 | 272 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1322 | 554 | Pfam | Protein kinase domain | 318 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1322 | 554 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 40 | 489 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
HCH5g1322 | 554 | SMART | pkinase_C_6 | 422 | 486 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1322 | 554 | CDD | STKc_NDR_like | 118 | 485 | - | - | |
HCH5g1322 | 554 | Gene3D | Transferase(Phosphotransferase) domain 1 | 204 | 270 | - | - | |
HCH5g1322 | 554 | Gene3D | Transferase(Phosphotransferase) domain 1 | 320 | 439 | - | - | |
HCH5g1322 | 554 | MobiDBLite | consensus disorder prediction | 516 | 554 | - | - | |
HCH5g1322 | 554 | Gene3D | Phosphorylase Kinase; domain 1 | 440 | 450 | - | - | |
HCH5g1322 | 554 | Gene3D | Phosphorylase Kinase; domain 1 | 118 | 203 | - | - | |
HCH5g1322 | 554 | ProSiteProfiles | Protein kinase domain profile. | 120 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1322 | 554 | SMART | serkin_6 | 120 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1322 | 554 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 422 | 494 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g1322 | 554 | FunFam | Non-specific serine/threonine protein kinase | 204 | 271 | - | - | |
HCH5g1322 | 554 | FunFam | Non-specific serine/threonine protein kinase | 91 | 203 | - | - | |
HCH5g1322 | 554 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
HCH5g1322 | 554 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
HCH5g1322 | 554 | CDD | MobB_NDR_LATS-like | 54 | 115 | - | - | |
HCH5g1322 | 554 | MobiDBLite | consensus disorder prediction | 519 | 536 | - | - | |
HCH5g1322 | 554 | Coils | Coil | 62 | 89 | - | - | |
HCH5g1322 | 554 | ProSitePatterns | Protein kinases ATP-binding region signature. | 126 | 149 | IPR017441 | GO:0005524(InterPro) | |
HCH5g1322 | 554 | SUPERFAMILY | Protein kinase-like (PK-like) | 93 | 474 | IPR011009 | - | |
HCH5g1322 | 554 | FunFam | Non-specific serine/threonine protein kinase | 320 | 439 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g1322 | HCH-Chr5:50162037 | HCH6g1494 | HCH-Chr6:48512087 | 4.90E-249 | dispersed | |
HCH5g1322 | HCH-Chr5:50162037 | HCH12g0486 | HCH-Chr12:2843049 | 1.30E-180 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81531 | PF00069 | Pkinase | 1.20E-63 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g1322 | K08790 | - | csv:101221720 | 971.074 |