Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g1322 ATGGATTCGGCGAGAAGTTGGTTTCATAAGCTTCAACCAAGAGATAAATTGAGAGGTTCGACGAAGAAGAAGGATCCTCTTTGTGGAGAAAATGAGGATTCAATTGAACAAACTGATGAAGAAGCTCTTTCCAATATCACAAAGCAGAAAGTTGCTGCGGCAAAGCAGTATATTGAAAATCATTACAAGGAGCAAATGAAAAATTTGCAAGAGAGAAAGGAACGACGAAATACATTGGAAAAGAAGTTGGCCGATGCTGATGTTTCTGAGGAAGATCAAAACAATTTACTTAAATTTTTAGAAAAGAAGGAAACTGAATACATGCGTCTCCAAAGACACAAAATGGGTGTTGATGATTTTGAATTACTTACAATTATTGGGAAGGGCGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAAGTGTATGCAATGAAAAAACTTAAAAAATCAGAGATGCTTCGAAGGGGGCAGGTTGAGCATGTAAAAGCCGAAAGAAATCTGCTTGCTGAAGTTGACAGCAATTGCATCGTCAAGCTTTACTGTTCTTTTCAAGATGATGATTACCTTTATCTTATTATGGAGTATCTCCCTGGTGGAGATATGATGACTTTACTCATGAGAAAAGATACTCTGACTGAGGATGAAGCAAGGTTTTATGTTGGAGAAATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCACAGAGATATTAAGCCGGACAACTTGCTACTTGATAGATTTGGACACTTGAGACTCTCTGACTTTGGACTTTGTAAGCCATTAGATTGTAGTACGCTCCAAGAACAAGATTTCGCTGTAGTGAACACCCGTAATGGGGCGGCTGGAGGACAGACCGATGAACGCTCTGGAGCTCCTACTCGCACTCAACAAGAGCAACTACAACATTGGCAGAAGAATAGGAGAATGCTTGCCTTTTCCACAGTTGGTACACCAGATTATATTGCTCCAGAGGTTCTGTTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTATCCACCATTTTACTCTGATGATCCAATGTCAACATGCCGGAAGATAGTAAACTGGAGAACTCATTTGAAGTTTCCTGATGAAGCAAAGCTATCTTCTGGAGCGAAAGATATCATCAGTAAACTATTATGCAATGTGAACCAGAGACTGGGGTCAAATGGCGTAGATGAAATTAAGGCGCATCCATGGTTTCAAGGTATCGAATGGGAAAGGCTATATCAGATGGAAGCTGCATTTGTACCTGAGGTTAAGGATGATCTTGATACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCTCATAGCAATACTTCTTCTAAAACTGGTCCTTGGAGGAAGATGCTGTCATCTAAGGATATCAACTTCGTTGGGTACACTTACAAGAACTTCGAAATTGTGAATGATTATCAATTGCCAGGGATGGCTGAATTGAAGAAAAAATGCAGCAAACCGGCTAGACCGTCCATCAAGTCACTCTTTGATGGCGAGTCAGAGGCATCCTGTAATAATAGTCAACCCACCGAAGGTAGTTTTTTAAACCAATTGCCGCCGTTTCCACTGGATGCATCTGAAAAGAGGAAACAGTCTTTGTGA 1665 40.06 MDSARSWFHKLQPRDKLRGSTKKKDPLCGENEDSIEQTDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRNTLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDRFGHLRLSDFGLCKPLDCSTLQEQDFAVVNTRNGAAGGQTDERSGAPTRTQQEQLQHWQKNRRMLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSSGAKDIISKLLCNVNQRLGSNGVDEIKAHPWFQGIEWERLYQMEAAFVPEVKDDLDTQNFEKFEESDSHSNTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPARPSIKSLFDGESEASCNNSQPTEGSFLNQLPPFPLDASEKRKQSL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50162037 50165357 - evm.model.ptg000001l.1322 HCH5g1322 545474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g1322 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g1322 554 Pfam Protein kinase C terminal domain 440 484 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1322 554 Pfam Protein kinase domain 121 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1322 554 Pfam Protein kinase domain 318 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1322 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 489 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
HCH5g1322 554 SMART pkinase_C_6 422 486 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1322 554 CDD STKc_NDR_like 118 485 - -
HCH5g1322 554 Gene3D Transferase(Phosphotransferase) domain 1 204 270 - -
HCH5g1322 554 Gene3D Transferase(Phosphotransferase) domain 1 320 439 - -
HCH5g1322 554 MobiDBLite consensus disorder prediction 516 554 - -
HCH5g1322 554 Gene3D Phosphorylase Kinase; domain 1 440 450 - -
HCH5g1322 554 Gene3D Phosphorylase Kinase; domain 1 118 203 - -
HCH5g1322 554 ProSiteProfiles Protein kinase domain profile. 120 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1322 554 SMART serkin_6 120 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1322 554 ProSiteProfiles AGC-kinase C-terminal domain profile. 422 494 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g1322 554 FunFam Non-specific serine/threonine protein kinase 204 271 - -
HCH5g1322 554 FunFam Non-specific serine/threonine protein kinase 91 203 - -
HCH5g1322 554 MobiDBLite consensus disorder prediction 1 31 - -
HCH5g1322 554 MobiDBLite consensus disorder prediction 1 41 - -
HCH5g1322 554 CDD MobB_NDR_LATS-like 54 115 - -
HCH5g1322 554 MobiDBLite consensus disorder prediction 519 536 - -
HCH5g1322 554 Coils Coil 62 89 - -
HCH5g1322 554 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524(InterPro)
HCH5g1322 554 SUPERFAMILY Protein kinase-like (PK-like) 93 474 IPR011009 -
HCH5g1322 554 FunFam Non-specific serine/threonine protein kinase 320 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1322 HCH-Chr5:50162037 HCH6g1494 HCH-Chr6:48512087 4.90E-249 dispersed
HCH5g1322 HCH-Chr5:50162037 HCH12g0486 HCH-Chr12:2843049 1.30E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81531 PF00069 Pkinase 1.20E-63 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g1322 K08790 - csv:101221720 971.074