Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0004 ATGCTAACGGGCGTGCGCGTATCGGGGCTTATGCGCGCACCAGCCCCAACCATTAGTAGTTTTAGCAATAGCACCGTGTTGATATTTTTTATTATCTCCTTATCATGCATGATCTTATCGACTCTTGGCGATGGCAATGTCAATGACGCAGAAACTCTCCTTCGATTCAAACGCTCATTGACATCAGCTGTGGCTCTTTACAATTGGGATCCTTCCATCCCTCCATGCGAAGCCAGCAAGGGAAATTGGATTGGTGTGCTTTGTTTGAATGGGAATGTTAGAGGTTTACGGCTTGAGAATATGGGACTCAAAGGGATGGTTGATATGAATCCACTTGTTTCATTGACTCATTTGCGTACTATCAGTTTCATGAATAACACCTTGGTTGGTCCTTGGCCTAATGTTATTGACAAATTGGCAAGTTTACGTTCGGTTTATCTTTCCTATAACCATTTTTCAGGACAAATTCCAGACGATGCCTTTTCGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCCAATTCCCTCATCTCTCGCTTCACTGTCTAGGCTTATGGAGTTGAGGCTTGATGGAAACAAATTTGAAGGCCACATTCCTGACTTTCAAATGCATACTTTGAAGGGCCTTAATGTCTCTAACAATGAATTGGAGGGTCCAATCCCCAACACATTAAGCTACATGGATCCTACCTCTTTCTCTGGTAACGAGAAACTGTGTGGAACTCCTCTTCCATCATCATGCACTACTAGTGGCTTATCGAAAACCAAGTCGGCATCCAGCTCTCTCCTGAAAATCGCTGTAATTCTTATAATTTTGGGGGTACTACTAGCAGTGGTTGCTGGTGTTTTCATTATAATAAGTTTAAGAAAGAAACCATTGAAGAAACTGGGGCAGATTGAAGATGACAAGTACATGGGAATGGGAATGGGAATGGGTTCCACTATTGGAAAGCAAACGGATACATACAAATCGCCTGATTCCATTGGGCAGTCAACGAAGAGGGGTGAGCATGGAAAATTATCATTTGTAAGAGATGACAGAGACATATTTGATTTACAAGATCTGCTTCGAGCGTCGGCAGAAATTTTAGGGAGTGGAGCTTTCGGTTCTTCTTACAAAGCAACCATACTTTGTAATTCTGTGGTTGTGAAGCGATACAAACAAATGAACAACGTAGGAAGAGATGATTTTCACGATTACATGAGAAGACTAGGAAGATTGACTCATCCAAATTTACTACCACTCGTTGCCTATTACTACAGGAGGGAAGAGAAGCTTTTGATTTCTGACTTTGTAGATAATGGAAGTTTGGCCAGCCATCTGCATGGAAACCACAATTTAGAGAAGCCAGGTCTTGATTGGCCAAACCGGTTGAAAATTATAAGAGGCATAGCAAGAGGGTTGTCAAGCCTATACAGCTCACTATCAAATATAGTAGCACCTCACGGGCATCTAAAATCATCAAATGTGCTTCTAGATGAGTCCCTTGATCCTTTATTGACTGATTATGGTTTACTACCAGTTGCAAATCAAGAACACAGCCAAAAACTAATGATGGCATACAAGTCACCTGAATATGCTCAACTTGGGCGGATCACCAAGAAAACAGATGTATGGAGCTTTGGAATAGTGATATTGGAGATATTGACAGGAAGATTCCCAGAGAATTATCTAACTCCAAATCATGAGAGTAAAGCAGATTTAGCCAGTTGGGTTAATAAGATGATAAAGGAGAAGAGGACGGTAGAGGTGTTTGATGTAGAGTTGGGAAGGGCAAGGGATAATTATAAAGGAGAGTTGTTAAAGATGTTGAAAATTGGATTGGATTGTTGTGAAGAAGATGTGGAGAGAAGATTGGATTTGAATGAGGTGGTTATCAAGATTGAAGAATTGAATGAGGGAGAATTAAGTGATGGTGGGGATAGAGATGGAGATGGAGATTTCTATCCTACTGCTGCTGGTGATACCAAACTCATGGATATGCTTTTATAG 2013 40.88 MLTGVRVSGLMRAPAPTISSFSNSTVLIFFIISLSCMILSTLGDGNVNDAETLLRFKRSLTSAVALYNWDPSIPPCEASKGNWIGVLCLNGNVRGLRLENMGLKGMVDMNPLVSLTHLRTISFMNNTLVGPWPNVIDKLASLRSVYLSYNHFSGQIPDDAFSGMKFLKKVFLTNNEFNGPIPSSLASLSRLMELRLDGNKFEGHIPDFQMHTLKGLNVSNNELEGPIPNTLSYMDPTSFSGNEKLCGTPLPSSCTTSGLSKTKSASSSLLKIAVILIILGVLLAVVAGVFIIISLRKKPLKKLGQIEDDKYMGMGMGMGSTIGKQTDTYKSPDSIGQSTKRGEHGKLSFVRDDRDIFDLQDLLRASAEILGSGAFGSSYKATILCNSVVVKRYKQMNNVGRDDFHDYMRRLGRLTHPNLLPLVAYYYRREEKLLISDFVDNGSLASHLHGNHNLEKPGLDWPNRLKIIRGIARGLSSLYSSLSNIVAPHGHLKSSNVLLDESLDPLLTDYGLLPVANQEHSQKLMMAYKSPEYAQLGRITKKTDVWSFGIVILEILTGRFPENYLTPNHESKADLASWVNKMIKEKRTVEVFDVELGRARDNYKGELLKMLKIGLDCCEEDVERRLDLNEVVIKIEELNEGELSDGGDRDGDGDFYPTAAGDTKLMDMLL 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 328906 331104 + evm.model.ptg000003l.1788 HCH6g0004 545498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0004 670 Gene3D Ribonuclease Inhibitor 48 160 IPR032675 -
HCH6g0004 670 SUPERFAMILY L domain-like 72 234 - -
HCH6g0004 670 SUPERFAMILY Protein kinase-like (PK-like) 368 636 IPR011009 -
HCH6g0004 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 48 639 IPR046959 -
HCH6g0004 670 Gene3D Transferase(Phosphotransferase) domain 1 439 649 - -
HCH6g0004 670 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 109 205 - -
HCH6g0004 670 Pfam Protein tyrosine and serine/threonine kinase 368 632 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0004 670 Gene3D Ribonuclease Inhibitor 161 256 IPR032675 -
HCH6g0004 670 Pfam Leucine rich repeat N-terminal domain 48 88 IPR013210 -
HCH6g0004 670 ProSiteProfiles Protein kinase domain profile. 364 638 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0004 670 FunFam Pollen receptor-like kinase 1 439 648 - -
HCH6g0004 670 Gene3D Phosphorylase Kinase; domain 1 332 438 - -
HCH6g0004 670 Pfam Leucine Rich Repeat 213 233 IPR001611 GO:0005515(InterPro)
HCH6g0004 670 Pfam Leucine Rich Repeat 141 159 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0004 HCH-Chr6:328906 HCH8g0788 HCH-Chr8:44481990 4.80E-65 dispersed
HCH6g0004 HCH-Chr6:328906 HCH8g1095 HCH-Chr8:46758794 1.00E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81532 PF07714 PK_Tyr_Ser-Thr 3.80E-28 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0004 K28077 - csv:101203276 880.552