Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0012 ATGCAACTGGTGTCGAATGATAATCAAAATAAAGATGATATTTTGGAACGTGAACCCATTTTAAGTCAATCTGATGTTCCGTCACAATCCTTAGAATCATCATCATCATCATCCTCATCATATTCCACTGAAATTATAGCTGTAGGGAGAGAGAGTTCTATCAGTGATAATGATCTACAAAATCTTCAAATTGACGAAACTTGTCGTCTGGTGAATTCGGATCAATCACAATGTCGTATATGCCTCGACACAGGAGGAGAAGACTTGATTGCTCCATGCCATTGCAGAGGCACTCAAAAGTATGTGCATAGATCATGTCTTGATAATTGGAGGTCCACAAAGGAGGGGTTTGCTTTTGCTCACTGTACAGAGTGCAGAGCTATGTTCATTTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCTAGGGACCATGCGTTCATTTTTATCATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGAGAGGAACTCAGGGAAATGTTTGGTTATGAAGAACATCCGTATGGGTTCTATGCCATGGCCGTTTTGGCAATCATATTGGTTGGTTTACTATATGGTTTTTTCATAGCCATCATATGTGGGCAGAGGATCAATGAAAGACATTACCACGTTCTTGCTAAACAAGAACTAACAAAGGAATATATAGTTGAAGATCGAGAACGTAACAAGAATGTTCCAGAACTTGACCCAAGCCATGTGATGGAGCTAAGGATGTTGGGGCTTTATTAA 798 40.23 MQLVSNDNQNKDDILEREPILSQSDVPSQSLESSSSSSSSYSTEIIAVGRESSISDNDLQNLQIDETCRLVNSDQSQCRICLDTGGEDLIAPCHCRGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDRERNKNVPELDPSHVMELRMLGLY 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 367974 369434 + evm.model.ptg000003l.1780 HCH6g0012 545506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0012 265 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 197 265 - -
HCH6g0012 265 MobiDBLite consensus disorder prediction 1 37 - -
HCH6g0012 265 ProSiteProfiles Zinc finger RING-CH-type profile. 70 132 IPR011016 GO:0008270(InterPro)
HCH6g0012 265 Pfam RING-variant domain 78 125 IPR011016 GO:0008270(InterPro)
HCH6g0012 265 MobiDBLite consensus disorder prediction 22 37 - -
HCH6g0012 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 130 IPR013083 -
HCH6g0012 265 SMART ringv_2 77 126 IPR011016 GO:0008270(InterPro)
HCH6g0012 265 SUPERFAMILY RING/U-box 73 129 - -
HCH6g0012 265 CDD RING_CH-C4HC3_MARCH 78 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0012 HCH-Chr6:367974 HCH8g0799 HCH-Chr8:44576173 8.30E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0012 - - - 0.0