Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0022 ATGCAGCTGCTTTTTTACCATTTCTTGCTCTTGTTATGCTTTTATTCTACTGTTTCTTCTTTAAGCTCTGATGGGTTGGCTTTGTTATCACTCAAGAGGCACTGGACATCTGTGCCTCCTTTGAATTGGAATGCATCTGATTCCACTCCTTGTTCTTGGTTTGGTATTCAATGTGACCTTAATTATCGTGTCATTTCCTTGAATCTCTCTTCTTATGAACTTTCAGGTCAGTTTGGATCTCAAGTAGCACTTTTAACTTACTTGCAAACCATTGATTTGAACTCTAATAGCTTATCTGGTGCAATACCTCACGGCCTTGGTAATTGTAGTCATTTAGAGTACTTGGATCTCTCTTTGAATGGATTTCTTGGAGAAATTCCTGACACTTTAAGGAACCTCAAGAACTTGACTTTCTTCAGCTTTTATGCTAACTTTCTCACTGGTGAGATTCCTGATTTTCTCTTTCAAATTCCAAAGTTGCAGTATGTGTATCTTAACAGCAACAATTTCAGTGGTTCTATTTCTTCAAATGTTGGGAATTTGAGTGAGCTCTTGCATTTATATTTGTATGGTAATCACTTGTCTGGAACTATACCTTCTTCCATTGGGAATTGTAGTAAACTGGAAAATCTATATTTGGATGACAACTATTTGGTGGGAATCTTGCCCAATAGTTTAAACAATCTTCACAATCTTGTTCATCTAGGTGTCAGCTATAACAATCTTGAGGGTCCTATTCCTTTGGGTTCAGGTGGTTGCAAGAATTTAGAATATCTAGATTTGTCTTTCAATGGTTATACAGGAGGTATACCGGCCGGGTTGAGAAACTGTAGCGCCTTAACAACCTTAGTCGCCGTAAAGTCGAATCTAACGGGTACGATTCCTTCTTCTTTTGGCCGGCTAAATAAGCTCCAAGTTCTTGATCTATCTGAAAATCAACTGTCTGGGAAAATACCCTCTGAACTTGGGGCATGCAAATCCTTGAAAGAACTGAATTTGTATAGCAACCAACTTGAGGGACACATTCCCAGTGAATTGGCTTTGCTAAGTAAATTGCAGGACCTCCAATTGTTTTCAAACCGTCTAACTGGGGAGATTCCAATTAGCATCTGGAAGATTCCGAGTCTCATGCATATTCTTGTGTACAACAATAACCTTTCTGGGGAACTACCTTTGGCAATAACGGAGCTGAAACAACTGAAAAACATTTCTTTGTTCAACAATCAGTTTTTTGGAGTCATACCTCAAAGTTTGGGAATCAACAGTAGTTTAGTGCAACTGGAGCTCACTGGTAATAGGTTCACTGGTCAAATCCCACCAAAGCTTTGCTCTGGAAAGGAACTAAGAGTGCTAAATTTAGGTATGAATCAACTTGAAGGTAGCATACCTTCAGATATCGGAACCTGTTCCACTCTGCAGAGGTTAATTTTGAAAAGGAATAATCTCATGGGAGTTCTACCAGCATTCACGAGAAATCACAGGCTTCTATTCATGGATATCAGCGAAAATAACCTGAATGGAACAATTCCCTCGAGTTTGGGCAATTGCGCTAATATCACCTCAATTAATTTGTCAAAGAACAAGTTTTCAGGTCTGTTACCGGACAAGTTGGGAAATCTTGTGAATATACAGTCATTGAGTTTGTCTCACAACCTGTTGGAAGGACCTCTCCCATCTTCCCTATCAAATTGTAACAAACTGATACAGTTTGATGTAGGATTCAATTTATTGAATGGTTCTGTTCCACATACTTTGGGCAGCTGGAAAGTTATAACCACATTGATACTAAAAGAGAATAAATTTACTGGAGGTATCCCGCATCTCTTTTCAGAATTTGTAAAGCTTACACTGCTGGATCTTGGTGGCAATTTGTTTGGAGGTGGAATCCCTTCATCTATTGGAGATATGAGGAACCTGTTTTATTCCTTGAATCTCAGTAATAATGGATTGACTGGCCAAATACCTTCTGAGCTACTAAGTTTGAGCAAGCTACAAAAGTTGGATATATCTCACAACAATTTGACTGGAAGTTTACGAGTTCTTGGTGAACTCAGTTCATTAGTTGACATTAACATCTCAGACAATCTATTCACGGGTCCTGTGCCACGAAAGTTAATGAAATTCCTAAAATCTCACCCATCATCATTCTCAGGTAACCCTGGTCTGTGCATCAGCTGTGATATACCATTAAGTTGCGACATAAGTGGCAGTATCAAACCTTGTCCTAGTCAATCAAGCTCTCATAAAGGTCTTGGCAATATACAAGTTTCAATGATAGCTCTCGGATCTTCACTTTTTATTGTTTTTCTGCTTCTGGGGTTAGTCTATAAGTTATTTAATAGCAGAAGAAACAAGCAGACAATTGAGATTTCTGCTCAAGAGGGAACATCTACCCTGCTCAACAAGGTGATGGAGGCCACTGCTAATCTAGATGAGCGTTTCATCATAGGGAGAGGAGCACATGGAGTGGTCTATAAGGCTACCCTGGGTTCAAATAGAGCTTTTGCAGTAAAGAAGCTTGCATTTGGAGGGCGTAAAGGAGGAAGCCTGAGTATGGTTAGAGAAATTCAAACAGTTGGAAGCATCAGGCACCGAAATCTGCTCACTTTGGAAGACTTTTGGTTGGAAAAAGATCATGGTCTATTGTTGTATAGATACCAGCCAAACGGGAGCCTGCATGATGTGTTGCATGAGATGAATCCAACTCCAGCTCTAACATGGGAGGTCCGCTATAAGATAGCCATCGGTATTGCACATGGATTGGCATATCTCCATTATGATTGTGACCCTCCTATCGTACACCGAGACATCAAACCGCAAAATATACTTTTAGATTCAGAGATGAACCCTCATATCGCTGATTTCGGTCTGGCAAAGCTGCTGGATCAGTCTGCTACATCAACACTATCTTCTTCTGTTGCGGGTACAATTGGCTACATTGCACCAGAAAATGCATTTTCAACATCAAAGAGCAAAGCTTCTGATGTATACAGTTATGGGGTGGTTTTGCTTGAGCTGATAACAAGAAAGAAGCCATCAGATCCATCATTCATGGATGGAAGGGATATTGTGGCTTGGGTTTGGTCTGTTTGCAGAGAAACACGAGATATCGATAGAATTACCGATCAAAGCCTTGAGGTAGAACTAATGGATTCTGATATCAGGGAGCAAATTTGGAATGTGCTTCTTGTTGCTTTGAGATGTACAGAAAAGGAGCCTAACAAGAGACCAACTATGAGAGATGTTGTCAACCAATTGATTGATTCAAAGACCAGCCATACCCAATACAACAAATATGGCTAA 3303 39.87 MQLLFYHFLLLLCFYSTVSSLSSDGLALLSLKRHWTSVPPLNWNASDSTPCSWFGIQCDLNYRVISLNLSSYELSGQFGSQVALLTYLQTIDLNSNSLSGAIPHGLGNCSHLEYLDLSLNGFLGEIPDTLRNLKNLTFFSFYANFLTGEIPDFLFQIPKLQYVYLNSNNFSGSISSNVGNLSELLHLYLYGNHLSGTIPSSIGNCSKLENLYLDDNYLVGILPNSLNNLHNLVHLGVSYNNLEGPIPLGSGGCKNLEYLDLSFNGYTGGIPAGLRNCSALTTLVAVKSNLTGTIPSSFGRLNKLQVLDLSENQLSGKIPSELGACKSLKELNLYSNQLEGHIPSELALLSKLQDLQLFSNRLTGEIPISIWKIPSLMHILVYNNNLSGELPLAITELKQLKNISLFNNQFFGVIPQSLGINSSLVQLELTGNRFTGQIPPKLCSGKELRVLNLGMNQLEGSIPSDIGTCSTLQRLILKRNNLMGVLPAFTRNHRLLFMDISENNLNGTIPSSLGNCANITSINLSKNKFSGLLPDKLGNLVNIQSLSLSHNLLEGPLPSSLSNCNKLIQFDVGFNLLNGSVPHTLGSWKVITTLILKENKFTGGIPHLFSEFVKLTLLDLGGNLFGGGIPSSIGDMRNLFYSLNLSNNGLTGQIPSELLSLSKLQKLDISHNNLTGSLRVLGELSSLVDINISDNLFTGPVPRKLMKFLKSHPSSFSGNPGLCISCDIPLSCDISGSIKPCPSQSSSHKGLGNIQVSMIALGSSLFIVFLLLGLVYKLFNSRRNKQTIEISAQEGTSTLLNKVMEATANLDERFIIGRGAHGVVYKATLGSNRAFAVKKLAFGGRKGGSLSMVREIQTVGSIRHRNLLTLEDFWLEKDHGLLLYRYQPNGSLHDVLHEMNPTPALTWEVRYKIAIGIAHGLAYLHYDCDPPIVHRDIKPQNILLDSEMNPHIADFGLAKLLDQSATSTLSSSVAGTIGYIAPENAFSTSKSKASDVYSYGVVLLELITRKKPSDPSFMDGRDIVAWVWSVCRETRDIDRITDQSLEVELMDSDIREQIWNVLLVALRCTEKEPNKRPTMRDVVNQLIDSKTSHTQYNKYG 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 405880 409271 - evm.model.ptg000003l.1770 HCH6g0022 545516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0022 1100 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 495 1086 - -
HCH6g0022 1100 SUPERFAMILY L domain-like 42 415 - -
HCH6g0022 1100 SMART LRR_typ_2 85 109 IPR003591 -
HCH6g0022 1100 SMART LRR_typ_2 540 564 IPR003591 -
HCH6g0022 1100 SMART LRR_typ_2 661 684 IPR003591 -
HCH6g0022 1100 SMART LRR_typ_2 301 325 IPR003591 -
HCH6g0022 1100 SMART LRR_typ_2 446 469 IPR003591 -
HCH6g0022 1100 SMART LRR_typ_2 229 253 IPR003591 -
HCH6g0022 1100 SMART LRR_typ_2 181 205 IPR003591 -
HCH6g0022 1100 Gene3D Phosphorylase Kinase; domain 1 779 886 - -
HCH6g0022 1100 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
HCH6g0022 1100 Pfam Protein kinase domain 815 1085 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0022 1100 ProSiteProfiles Protein kinase domain profile. 810 1096 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0022 1100 SMART LRR_sd22_2 181 213 - -
HCH6g0022 1100 SMART LRR_sd22_2 229 261 - -
HCH6g0022 1100 SMART LRR_sd22_2 301 333 - -
HCH6g0022 1100 SMART LRR_sd22_2 661 686 - -
HCH6g0022 1100 SMART LRR_sd22_2 540 566 - -
HCH6g0022 1100 SMART LRR_sd22_2 85 117 - -
HCH6g0022 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0022 1100 ProSiteProfiles Leucine-rich repeat profile. 663 685 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 175 270 - -
HCH6g0022 1100 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 776 886 - -
HCH6g0022 1100 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine rich repeat 207 264 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 405 731 - -
HCH6g0022 1100 FunFam Predicted protein 293 392 - -
HCH6g0022 1100 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524(InterPro)
HCH6g0022 1100 Gene3D Ribonuclease Inhibitor 420 492 IPR032675 -
HCH6g0022 1100 Gene3D Ribonuclease Inhibitor 182 419 IPR032675 -
HCH6g0022 1100 Gene3D Ribonuclease Inhibitor 586 728 IPR032675 -
HCH6g0022 1100 Gene3D Transferase(Phosphotransferase) domain 1 888 1099 - -
HCH6g0022 1100 SMART serkin_6 810 1087 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0022 1100 SUPERFAMILY L domain-like 398 728 - -
HCH6g0022 1100 SUPERFAMILY Protein kinase-like (PK-like) 788 1086 IPR011009 -
HCH6g0022 1100 ProSiteProfiles Leucine-rich repeat profile. 327 349 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 FunFam Serine/threonine-protein kinase-like protein CCR4 887 1099 - -
HCH6g0022 1100 Pfam Leucine Rich Repeat 663 678 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 159 181 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 184 205 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 518 540 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 495 516 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 614 636 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 642 661 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 111 133 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 88 109 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 Pfam Leucine Rich Repeat 542 564 IPR001611 GO:0005515(InterPro)
HCH6g0022 1100 PRINTS Leucine-rich repeat signature 304 317 - -
HCH6g0022 1100 PRINTS Leucine-rich repeat signature 661 674 - -
HCH6g0022 1100 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 21 173 - -
HCH6g0022 1100 Gene3D Ribonuclease Inhibitor 493 585 IPR032675 -
HCH6g0022 1100 Gene3D Ribonuclease Inhibitor 22 178 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0921 HCH-Chr10:11992425 HCH6g0022 HCH-Chr6:405880 1.80E-17 dispersed
HCH6g0022 HCH-Chr6:405880 HCH7g1395 HCH-Chr7:46713701 1.10E-63 dispersed
HCH6g0022 HCH-Chr6:405880 HCH6g0026 HCH-Chr6:435463 1.90E-18 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81533 PF00069 Pkinase 5.90E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0022 K28089 - csv:101204561 1494.56