Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0026 ATGAAACCGGTTCAGACGGCAGCAGCAGGTCAGGGGAGCGATCGTTCACGGCGTCGTCCAAATCTAACCATACCTCTCCCTCAAAGGGATAACACCTCTTTAGCGGTTCCTCTCCCTCTACCCCGCCCATCCACCGCGGCGCCGGGGGTGAACCGACAACCAAAGCAGCAAGAAGAAGAAGAAGAGAAGGAAAAAGAAAAGGAAGAGGAAAGAAAAAAGGAAAAAAGGGGTTCCTTTACCGTTTCGGAGCTAGAACGCGTTAGCAGAATCGGAAGCGGATGCGGCGGAACCGTTTACAAAGTAATCCACCGTCCCAGCTCGCGTATATACGCTCTCAAAGTAATATACGGGAATCACGAAGACGCGGTCCGCGTTCAGATGTGCCGTGAAGTGGAGATCCTCCGAGACGTCGACAATCCGTACGTCGTAAAGTGCCACGACATGTTCGATCACAAGGGAGAAATCCAGGTTCTTCTCGAATACATGGATGGCGGTTCATTGGAAGGAACCCACATCCCTAACGAACTCAATCTCTCCGATTTAGCCCGTCAGATTCTAAACGGTCTGGCATACCTTCACAGTCGTCGGATCGTTCATCGCGATATAAAACCCTCGAATCTTCTGATAAATTCAAGAAGGCAGGTGAAGATTGCGGATTTTGGAGTGGGGAGGATATTGGAGCAGACGATGGATCCGTGTAATTCATCGGTGGGGACGATTGCATATATGAGTCCGGAGAGGATAAATTCGGATCTGAATCAAGGTCAGTATAATGGTTATGCGGGTGATATATGGAGTTTTGGAGTGAGTATATTGGAATTTTATATGGGGAGGTTTCCACTTGCTGTGGAAAGACCTGGGGATTGGGCTAGTTTGATGTGTGCTATATGTATGGCTCAACCCCCCGAGGCCCCGGTCGAGGCCTCCCCCGAATTTCGACATTTTATAGCTTGTTGTTTGCAGAGAGAGGCTAGGAGGAGATGGACTGCTGCTAGGTTGTTGGAACATCCCTTTATTACTCGTTCCAATCCCAATCCCAATCCCAATTCCCACCACTCTCACCTCCCTCATCACAATTTACGCCAATTATTACCTCCTCCCCCCAGTCTTTCTTGA 1116 49.37 MKPVQTAAAGQGSDRSRRRPNLTIPLPQRDNTSLAVPLPLPRPSTAAPGVNRQPKQQEEEEEKEKEKEEERKKEKRGSFTVSELERVSRIGSGCGGTVYKVIHRPSSRIYALKVIYGNHEDAVRVQMCREVEILRDVDNPYVVKCHDMFDHKGEIQVLLEYMDGGSLEGTHIPNELNLSDLARQILNGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYMGRFPLAVERPGDWASLMCAICMAQPPEAPVEASPEFRHFIACCLQREARRRWTAARLLEHPFITRSNPNPNPNSHHSHLPHHNLRQLLPPPPSLS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 435463 436578 + evm.model.ptg000003l.1766 HCH6g0026 545520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0026 371 MobiDBLite consensus disorder prediction 339 371 - -
HCH6g0026 371 MobiDBLite consensus disorder prediction 54 81 - -
HCH6g0026 371 Gene3D Phosphorylase Kinase; domain 1 52 163 - -
HCH6g0026 371 FunFam Mitogen-activated protein kinase 2 164 351 - -
HCH6g0026 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0026 371 SMART serkin_6 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0026 371 SUPERFAMILY Protein kinase-like (PK-like) 74 359 IPR011009 -
HCH6g0026 371 Pfam Protein kinase domain 85 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0026 371 Gene3D Transferase(Phosphotransferase) domain 1 168 355 - -
HCH6g0026 371 MobiDBLite consensus disorder prediction 1 81 - -
HCH6g0026 371 Coils Coil 51 78 - -
HCH6g0026 371 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 39 343 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
HCH6g0026 371 CDD PKc_MAPKK_plant_like 82 340 - -
HCH6g0026 371 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524(InterPro)
HCH6g0026 371 ProSiteProfiles Protein kinase domain profile. 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0026 K13413 - - csv:101219669 551.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0225 HCH-Chr3:1436069 HCH6g0026 HCH-Chr6:435463 5.40E-83 dispersed
HCH6g0026 HCH-Chr6:435463 HCH8g0625 HCH-Chr8:43046641 1.90E-50 dispersed
HCH6g0022 HCH-Chr6:405880 HCH6g0026 HCH-Chr6:435463 1.90E-18 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0625 . 17 352 MAP Kinase Kinase Gene Family AT4G26070 67.4 4.7e-133 471.1
HCH10g0549 . 31 357 MAP Kinase Kinase Gene Family AT4G26070 66.8 4.7e-125 444.5
HCH10g0504 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 6.8e-108 387.5
HCH8g0625 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 68.9 1.4e-134 476.1
HCH10g0549 . 6 331 MAP Kinase Kinase Gene Family AT4G29810 64.6 3.1e-121 431.8
HCH10g0504 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 3.0e-108 388.7
HCH9g0122 . 36 519 MAP Kinase Kinase Gene Family AT5G40440 79.3 1.3e-227 785.8
HCH6g0026 . 82 371 MAP Kinase Kinase Gene Family AT1G51660 74.1 1.2e-123 439.9
HCH6g0026 . 80 367 MAP Kinase Kinase Gene Family AT3G21220 72.9 2.6e-123 438.7
HCH3g0225 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.4 6.3e-85 311.2
HCH10g0504 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.1 8.0e-168 586.6
HCH8g0625 . 10 351 MAP Kinase Kinase Gene Family AT5G56580 59.8 4.2e-116 414.8
HCH10g0549 . 20 345 MAP Kinase Kinase Gene Family AT5G56580 59.5 7.6e-110 394.0
HCH3g0225 . 1 309 MAP Kinase Kinase Gene Family AT1G18350 61.9 5.8e-106 380.9
HCH6g0026 . 80 342 MAP Kinase Kinase Gene Family AT1G18350 52.6 1.9e-77 286.2
HCH3g0225 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.3 2.3e-80 295.8
HCH3g0225 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.8 1.3e-113 406.4
HCH6g0026 . 83 339 MAP Kinase Kinase Gene Family AT1G73500 53.8 3.6e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81535 PF00069 Pkinase 8.60E-60 CL0016 HCH PK