Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0026 ATGAAACCGGTTCAGACGGCAGCAGCAGGTCAGGGGAGCGATCGTTCACGGCGTCGTCCAAATCTAACCATACCTCTCCCTCAAAGGGATAACACCTCTTTAGCGGTTCCTCTCCCTCTACCCCGCCCATCCACCGCGGCGCCGGGGGTGAACCGACAACCAAAGCAGCAAGAAGAAGAAGAAGAGAAGGAAAAAGAAAAGGAAGAGGAAAGAAAAAAGGAAAAAAGGGGTTCCTTTACCGTTTCGGAGCTAGAACGCGTTAGCAGAATCGGAAGCGGATGCGGCGGAACCGTTTACAAAGTAATCCACCGTCCCAGCTCGCGTATATACGCTCTCAAAGTAATATACGGGAATCACGAAGACGCGGTCCGCGTTCAGATGTGCCGTGAAGTGGAGATCCTCCGAGACGTCGACAATCCGTACGTCGTAAAGTGCCACGACATGTTCGATCACAAGGGAGAAATCCAGGTTCTTCTCGAATACATGGATGGCGGTTCATTGGAAGGAACCCACATCCCTAACGAACTCAATCTCTCCGATTTAGCCCGTCAGATTCTAAACGGTCTGGCATACCTTCACAGTCGTCGGATCGTTCATCGCGATATAAAACCCTCGAATCTTCTGATAAATTCAAGAAGGCAGGTGAAGATTGCGGATTTTGGAGTGGGGAGGATATTGGAGCAGACGATGGATCCGTGTAATTCATCGGTGGGGACGATTGCATATATGAGTCCGGAGAGGATAAATTCGGATCTGAATCAAGGTCAGTATAATGGTTATGCGGGTGATATATGGAGTTTTGGAGTGAGTATATTGGAATTTTATATGGGGAGGTTTCCACTTGCTGTGGAAAGACCTGGGGATTGGGCTAGTTTGATGTGTGCTATATGTATGGCTCAACCCCCCGAGGCCCCGGTCGAGGCCTCCCCCGAATTTCGACATTTTATAGCTTGTTGTTTGCAGAGAGAGGCTAGGAGGAGATGGACTGCTGCTAGGTTGTTGGAACATCCCTTTATTACTCGTTCCAATCCCAATCCCAATCCCAATTCCCACCACTCTCACCTCCCTCATCACAATTTACGCCAATTATTACCTCCTCCCCCCAGTCTTTCTTGA 1116 49.37 MKPVQTAAAGQGSDRSRRRPNLTIPLPQRDNTSLAVPLPLPRPSTAAPGVNRQPKQQEEEEEKEKEKEEERKKEKRGSFTVSELERVSRIGSGCGGTVYKVIHRPSSRIYALKVIYGNHEDAVRVQMCREVEILRDVDNPYVVKCHDMFDHKGEIQVLLEYMDGGSLEGTHIPNELNLSDLARQILNGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYMGRFPLAVERPGDWASLMCAICMAQPPEAPVEASPEFRHFIACCLQREARRRWTAARLLEHPFITRSNPNPNPNSHHSHLPHHNLRQLLPPPPSLS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 435463 436578 + evm.model.ptg000003l.1766 HCH6g0026 545520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0026 371 MobiDBLite consensus disorder prediction 339 371 - -
HCH6g0026 371 MobiDBLite consensus disorder prediction 54 81 - -
HCH6g0026 371 Gene3D Phosphorylase Kinase; domain 1 52 163 - -
HCH6g0026 371 FunFam Mitogen-activated protein kinase 2 164 351 - -
HCH6g0026 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0026 371 SMART serkin_6 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0026 371 SUPERFAMILY Protein kinase-like (PK-like) 74 359 IPR011009 -
HCH6g0026 371 Pfam Protein kinase domain 85 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0026 371 Gene3D Transferase(Phosphotransferase) domain 1 168 355 - -
HCH6g0026 371 MobiDBLite consensus disorder prediction 1 81 - -
HCH6g0026 371 Coils Coil 51 78 - -
HCH6g0026 371 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 39 343 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
HCH6g0026 371 CDD PKc_MAPKK_plant_like 82 340 - -
HCH6g0026 371 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524(InterPro)
HCH6g0026 371 ProSiteProfiles Protein kinase domain profile. 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0225 HCH-Chr3:1436069 HCH6g0026 HCH-Chr6:435463 5.40E-83 dispersed
HCH6g0026 HCH-Chr6:435463 HCH8g0625 HCH-Chr8:43046641 1.90E-50 dispersed
HCH6g0022 HCH-Chr6:405880 HCH6g0026 HCH-Chr6:435463 1.90E-18 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81535 PF00069 Pkinase 8.60E-60 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0026 K13413 - csv:101219669 551.592