Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0027 ATGGTAAAGATGGGACCAGTAGAGGAGAAAACAAATTATCTTTCTGATGAAGATGTTCCACTCAAGTCATCATCATCAGTTGCTAAAAATGTGTTGCATCATAGTTTTGATTTTGAGATGCCTCCTCATACGCGTTCTTCTATCGATACCGATACCACGAAAAGTTTGTGGAATACTAAAAATATTCGTATTAGACCTCTTACAAGTGCATATATAGTGTTGATTAGAGCAAAGATCAATGTCTTATTACCTTTTGGTCCTTTGGCAATTCTCCTACATTATTTAACTGGAAAGCATGGATGGGTCTTCTTTTTCACCTTACTTGGAATCACACCTTTGGCCGAACGTCTTGGTTATGCAACCGAGCAGCTTGCTTTTTACACAGGACCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATATCAATTTATGCCTTAAAGAGCGGGATGATTAGGGTTGTTCAACAGTCACTACTCGGATCAATCTTGTCAAACATGCTCCTAGTCCTCGGTTGCGCTTTCTTCACTGGTGGGATTATTCATCATAAGAAGGTCCAGGTTTTCAATAAGGGTGCTGCTGTTGTGAATTCTGGATTATTGTTGATGGCTGTTATGGGAACAACTTTTCCGGCTGTGCTTCATTTCACCCACACAGAGCTTCATATTGGAGAGTCAGCTTTGGCTCTTTCAAGATTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTTCCTTTTCTTTCAACTAAAAAGTCAGCATAATCTATACGGTCATCTTGATGAGGGAGGAGATGATGAAGAAGAAGATGCTTCTGAACTTTATGCTTGGGAAGCAATCGGATGGCTTGCTATATTGACTGTTTGGGTGTCTATTTTGTCGGGATACCTGGTCGATGCTATCCAGGGAGCATCTGAATCATTAAATTTGCCTGTGGCTTTTATTAGTGTAATTTTATTGCCAATTGTTGGAAATGCTGCAGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAACTTGACATCACTCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCATTTTGCGTGGTCATCGGGTGGTGCATGGGAGAACCAATGGACTTAAACTTTAAACTCTTTGAGACAGCAACTCTGTTTATCACTGTGCTTGTAGTGGCCTTCATGTTGCAGGAAGGGACATCAAATTATTTCAAAGGTCTAATGCTTATTTTATGCTACCTCATTGTGGCAGCCAGTTTTTTTGTACATGTCGACCCTAGTAATGATGATGATTAA 1317 39.56 MVKMGPVEEKTNYLSDEDVPLKSSSSVAKNVLHHSFDFEMPPHTRSSIDTDTTKSLWNTKNIRIRPLTSAYIVLIRAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIIHHKKVQVFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHIGESALALSRFSSCIMLIAYASFLFFQLKSQHNLYGHLDEGGDDEEEDASELYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWCMGEPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNDDD 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 437090 443183 + evm.model.ptg000003l.1765 HCH6g0027 545521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0027 438 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 30 433 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
HCH6g0027 438 FunFam Vacuolar cation/proton exchanger 130 269 - -
HCH6g0027 438 NCBIfam calcium/proton exchanger 82 428 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
HCH6g0027 438 Pfam Sodium/calcium exchanger protein 101 256 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0027 438 Pfam Sodium/calcium exchanger protein 285 427 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0027 438 Gene3D - 276 429 IPR044880 -
HCH6g0027 438 Gene3D - 130 269 IPR044880 -
HCH6g0027 438 FunFam Vacuolar cation/proton exchanger 272 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0094 HCH-Chr11:1180591 HCH6g0027 HCH-Chr6:437090 1.50E-89 dispersed
HCH6g0027 HCH-Chr6:437090 HCH6g0909 HCH-Chr6:43853292 1.20E-152 dispersed
HCH6g0027 HCH-Chr6:437090 HCH9g0774 HCH-Chr9:5290648 1.10E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0027 K07300 - csv:101219432 744.962