Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0029 ATGGTGAAGAACTGGAGCTGGACAGAGCCGTTGCTGCTTATCAATATCTGCATTTTGGGATGGAGTACCATTTTTATCAATGGAGCTACGGATCCAGGGGATGTATCCGCTCTAAGTTCCATGTATAACAGTTTGAGCTCACCACCGATCCTGACACAATGGACCTCAACTGGTGGCGATCCCTGTGGGCAGTCTTGGAAGGGCATTACTTGCTCAGACTCACGGATCACAGAAATTATACTGTCTGGTTTAGGACTTTCTGGATCACTGGGATATCAGCTCGCAAGTTTGACTGCTCTAATTAATCTAGATGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCCCCTAACTTGCAGAAACTAAATCTTGGATATAATAACTATAGTGGAAGCATCCCTTATTCCATTTCTCAAATGAGTATGCTTAATTCCTTGAACATCAGCCACAATCAGCTTCAAAATCAAGTAAATGATATGTTTTGGAAACTTCCTTCCTTGTCCACATTGGATTTCTCTTACAATTTTTTATCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACACAATGTATTTGCAAAACAACCAATTCAGTGGCGCTATTGATGTTCTTGCAAATCTACCACTACAAAATCTGAATGTTGAGAACAACCATTTTACCGGATGGATTCCTGAACGATTGAAGAACATAAATCTGCAGGGGAATGGAAATTCTTGGAGTTTTGGCCTTGCACCTCCTCCTCCGCCTCGTACACCTACAGCCAACCAAAATGATAGATATCATAAGTCAGGGAACAATTACAGCCCACTAAGTAGTGATGCCGGTGAAGGTAGGCATAGATCAGGAATGAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTTGTAGTTGGGGGAGTAGTAGCATTTTTCCTTGTAAAGCGAAGATCCCAGACGTTATCCACAGACATAGAAAAGCAGAAGCGTGGGAGGAACCTGCCCAGCATACCTCCTGCTTCGAATGAAGTACAAGATTCATTGACAGATATGAAAACTTTCCATACATCTTCCTCATTTGATGCAAAAACATTGGATTCTCCTGCTTCAATTAATCTTAAGCCCCCACCTATTGAACGTCATAAATCATTTGATAATGATGATGATACCTTGAAGAAATCTGTTGTGAAGAAGACAAATATAGCTCCTATAAATGTGAAGTCATATTCAATAGCAGATCTTCAAATGGCTACGGGCAGTTTTAGTGTAGAAAACCTTCTCGGCGAGGGATCGTTTGGACGTGTATATCGGGCTCAGTTTGATGATGGGCAGGTTCTTGCTGTAAAGAAAATAGACTCATCTATCATCCCTGGAGAACTTTTGGAAGATTTCACAGAGATTGTTGCAAATGTTTCTCAGTTGCATCATCCCAATGTAACTGAGCTAATGGGTTATTGCTCAGAGCATGGCCTGCATTTGCTGGTGTATGAATTCCATAAGAATGGCTCCCTATATGACTTCTTGCACATATCAGATGAATATACCAAGCCATTGACTTGGAACTCACGTGTCAAAATCGCATTGGGGACTGCCCGCGCATTGGAGTACCTGCATGAGGTTTGTGCACCATCAATTGTTCACAAAAATATAAAGTCAACTAATATCTTGTTGGATGTTGAGCTCAATCCTCATCTCTCCGACTCTGGCCTGGCCAGCTTTATGACCAATCTTGATCAGCCAATGGATCACAATGCTGGATCTGGATACAGTGCTCCTGAAGTTACCATGTCTGGTCAATATACATTAAAAAGCGATGTATACGGTTTTGGCGTGGTGATGTTGGAACTTCTCAGCGGCCGTAAACCGTTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTAGTACGATGGGCTACACCTCAACTCCATGATATTGATGCATTGACTAAAATGGTAGATCCAGCACTCAAAGGGCTCTACCCAGTCAAGTCTCTCTCTCGCTTTGCAGATGTCGTTGCTCTTTGCGTCCAGCCTGAGCCCGAATTTAGACCACCTATGTCAGAGGTGGTGGAAGCATTGGTTCGTCTTGTGCAAAGAGCTAACATGAGTAGGAGAACATTTGGAAGTGATCATGGAGCATCTTCGAGAAATGATAGCCTTGATGCACTTGAAACATTTTGA 2181 42.69 MVKNWSWTEPLLLINICILGWSTIFINGATDPGDVSALSSMYNSLSSPPILTQWTSTGGDPCGQSWKGITCSDSRITEIILSGLGLSGSLGYQLASLTALINLDVSINNLGPDIPYQLPPNLQKLNLGYNNYSGSIPYSISQMSMLNSLNISHNQLQNQVNDMFWKLPSLSTLDFSYNFLSGALPQSFSNLTSMNTMYLQNNQFSGAIDVLANLPLQNLNVENNHFTGWIPERLKNINLQGNGNSWSFGLAPPPPPRTPTANQNDRYHKSGNNYSPLSSDAGEGRHRSGMSGGAIAGILISVLVVGGVVAFFLVKRRSQTLSTDIEKQKRGRNLPSIPPASNEVQDSLTDMKTFHTSSSFDAKTLDSPASINLKPPPIERHKSFDNDDDTLKKSVVKKTNIAPINVKSYSIADLQMATGSFSVENLLGEGSFGRVYRAQFDDGQVLAVKKIDSSIIPGELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLVYEFHKNGSLYDFLHISDEYTKPLTWNSRVKIALGTARALEYLHEVCAPSIVHKNIKSTNILLDVELNPHLSDSGLASFMTNLDQPMDHNAGSGYSAPEVTMSGQYTLKSDVYGFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRANMSRRTFGSDHGASSRNDSLDALETF 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 457729 463193 + evm.model.ptg000003l.1763 HCH6g0029 545523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0029 726 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 386 498 - -
HCH6g0029 726 Gene3D Ribonuclease Inhibitor 31 260 IPR032675 -
HCH6g0029 726 MobiDBLite consensus disorder prediction 261 279 - -
HCH6g0029 726 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
HCH6g0029 726 Gene3D Transferase(Phosphotransferase) domain 1 500 716 - -
HCH6g0029 726 MobiDBLite consensus disorder prediction 245 288 - -
HCH6g0029 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0029 726 MobiDBLite consensus disorder prediction 365 386 - -
HCH6g0029 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 257 - -
HCH6g0029 726 Gene3D Phosphorylase Kinase; domain 1 383 498 - -
HCH6g0029 726 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
HCH6g0029 726 Pfam Leucine Rich Repeat 216 236 IPR001611 GO:0005515(InterPro)
HCH6g0029 726 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515(InterPro)
HCH6g0029 726 SUPERFAMILY Protein kinase-like (PK-like) 403 693 IPR011009 -
HCH6g0029 726 CDD STKc_IRAK 427 696 - -
HCH6g0029 726 MobiDBLite consensus disorder prediction 323 344 - -
HCH6g0029 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0029 726 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 145 698 IPR046959 -
HCH6g0029 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 499 707 - -
HCH6g0029 726 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524(InterPro)
HCH6g0029 726 MobiDBLite consensus disorder prediction 706 726 - -
HCH6g0029 726 SUPERFAMILY L domain-like 30 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0886 HCH-Chr14:36578168 HCH6g0029 HCH-Chr6:457729 1.10E-121 dispersed
HCH6g0029 HCH-Chr6:457729 HCH7g0172 HCH-Chr7:1136776 5.50E-115 dispersed
HCH11g0581 HCH-Chr11:10287813 HCH6g0029 HCH-Chr6:457729 7.10E-110 transposed
HCH13g1042 HCH-Chr13:31155369 HCH6g0029 HCH-Chr6:457729 7.10E-94 transposed
HCH3g0962 HCH-Chr3:9299332 HCH6g0029 HCH-Chr6:457729 5.10E-150 transposed
HCH4g1561 HCH-Chr4:12183257 HCH6g0029 HCH-Chr6:457729 5.60E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81536 PF07714 PK_Tyr_Ser-Thr 2.60E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0029 - - - 0.0