Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0029 ATGGTGAAGAACTGGAGCTGGACAGAGCCGTTGCTGCTTATCAATATCTGCATTTTGGGATGGAGTACCATTTTTATCAATGGAGCTACGGATCCAGGGGATGTATCCGCTCTAAGTTCCATGTATAACAGTTTGAGCTCACCACCGATCCTGACACAATGGACCTCAACTGGTGGCGATCCCTGTGGGCAGTCTTGGAAGGGCATTACTTGCTCAGACTCACGGATCACAGAAATTATACTGTCTGGTTTAGGACTTTCTGGATCACTGGGATATCAGCTCGCAAGTTTGACTGCTCTAATTAATCTAGATGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCCCCTAACTTGCAGAAACTAAATCTTGGATATAATAACTATAGTGGAAGCATCCCTTATTCCATTTCTCAAATGAGTATGCTTAATTCCTTGAACATCAGCCACAATCAGCTTCAAAATCAAGTAAATGATATGTTTTGGAAACTTCCTTCCTTGTCCACATTGGATTTCTCTTACAATTTTTTATCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACACAATGTATTTGCAAAACAACCAATTCAGTGGCGCTATTGATGTTCTTGCAAATCTACCACTACAAAATCTGAATGTTGAGAACAACCATTTTACCGGATGGATTCCTGAACGATTGAAGAACATAAATCTGCAGGGGAATGGAAATTCTTGGAGTTTTGGCCTTGCACCTCCTCCTCCGCCTCGTACACCTACAGCCAACCAAAATGATAGATATCATAAGTCAGGGAACAATTACAGCCCACTAAGTAGTGATGCCGGTGAAGGTAGGCATAGATCAGGAATGAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTTGTAGTTGGGGGAGTAGTAGCATTTTTCCTTGTAAAGCGAAGATCCCAGACGTTATCCACAGACATAGAAAAGCAGAAGCGTGGGAGGAACCTGCCCAGCATACCTCCTGCTTCGAATGAAGTACAAGATTCATTGACAGATATGAAAACTTTCCATACATCTTCCTCATTTGATGCAAAAACATTGGATTCTCCTGCTTCAATTAATCTTAAGCCCCCACCTATTGAACGTCATAAATCATTTGATAATGATGATGATACCTTGAAGAAATCTGTTGTGAAGAAGACAAATATAGCTCCTATAAATGTGAAGTCATATTCAATAGCAGATCTTCAAATGGCTACGGGCAGTTTTAGTGTAGAAAACCTTCTCGGCGAGGGATCGTTTGGACGTGTATATCGGGCTCAGTTTGATGATGGGCAGGTTCTTGCTGTAAAGAAAATAGACTCATCTATCATCCCTGGAGAACTTTTGGAAGATTTCACAGAGATTGTTGCAAATGTTTCTCAGTTGCATCATCCCAATGTAACTGAGCTAATGGGTTATTGCTCAGAGCATGGCCTGCATTTGCTGGTGTATGAATTCCATAAGAATGGCTCCCTATATGACTTCTTGCACATATCAGATGAATATACCAAGCCATTGACTTGGAACTCACGTGTCAAAATCGCATTGGGGACTGCCCGCGCATTGGAGTACCTGCATGAGGTTTGTGCACCATCAATTGTTCACAAAAATATAAAGTCAACTAATATCTTGTTGGATGTTGAGCTCAATCCTCATCTCTCCGACTCTGGCCTGGCCAGCTTTATGACCAATCTTGATCAGCCAATGGATCACAATGCTGGATCTGGATACAGTGCTCCTGAAGTTACCATGTCTGGTCAATATACATTAAAAAGCGATGTATACGGTTTTGGCGTGGTGATGTTGGAACTTCTCAGCGGCCGTAAACCGTTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTAGTACGATGGGCTACACCTCAACTCCATGATATTGATGCATTGACTAAAATGGTAGATCCAGCACTCAAAGGGCTCTACCCAGTCAAGTCTCTCTCTCGCTTTGCAGATGTCGTTGCTCTTTGCGTCCAGCCTGAGCCCGAATTTAGACCACCTATGTCAGAGGTGGTGGAAGCATTGGTTCGTCTTGTGCAAAGAGCTAACATGAGTAGGAGAACATTTGGAAGTGATCATGGAGCATCTTCGAGAAATGATAGCCTTGATGCACTTGAAACATTTTGA 2181 42.69 MVKNWSWTEPLLLINICILGWSTIFINGATDPGDVSALSSMYNSLSSPPILTQWTSTGGDPCGQSWKGITCSDSRITEIILSGLGLSGSLGYQLASLTALINLDVSINNLGPDIPYQLPPNLQKLNLGYNNYSGSIPYSISQMSMLNSLNISHNQLQNQVNDMFWKLPSLSTLDFSYNFLSGALPQSFSNLTSMNTMYLQNNQFSGAIDVLANLPLQNLNVENNHFTGWIPERLKNINLQGNGNSWSFGLAPPPPPRTPTANQNDRYHKSGNNYSPLSSDAGEGRHRSGMSGGAIAGILISVLVVGGVVAFFLVKRRSQTLSTDIEKQKRGRNLPSIPPASNEVQDSLTDMKTFHTSSSFDAKTLDSPASINLKPPPIERHKSFDNDDDTLKKSVVKKTNIAPINVKSYSIADLQMATGSFSVENLLGEGSFGRVYRAQFDDGQVLAVKKIDSSIIPGELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLVYEFHKNGSLYDFLHISDEYTKPLTWNSRVKIALGTARALEYLHEVCAPSIVHKNIKSTNILLDVELNPHLSDSGLASFMTNLDQPMDHNAGSGYSAPEVTMSGQYTLKSDVYGFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRANMSRRTFGSDHGASSRNDSLDALETF 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 457729 463193 + evm.model.ptg000003l.1763 HCH6g0029 545523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0029 726 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 386 498 - -
HCH6g0029 726 Gene3D Ribonuclease Inhibitor 31 260 IPR032675 -
HCH6g0029 726 MobiDBLite consensus disorder prediction 261 279 - -
HCH6g0029 726 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
HCH6g0029 726 Gene3D Transferase(Phosphotransferase) domain 1 500 716 - -
HCH6g0029 726 MobiDBLite consensus disorder prediction 245 288 - -
HCH6g0029 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0029 726 MobiDBLite consensus disorder prediction 365 386 - -
HCH6g0029 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 257 - -
HCH6g0029 726 Gene3D Phosphorylase Kinase; domain 1 383 498 - -
HCH6g0029 726 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
HCH6g0029 726 Pfam Leucine Rich Repeat 216 236 IPR001611 GO:0005515(InterPro)
HCH6g0029 726 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515(InterPro)
HCH6g0029 726 SUPERFAMILY Protein kinase-like (PK-like) 403 693 IPR011009 -
HCH6g0029 726 CDD STKc_IRAK 427 696 - -
HCH6g0029 726 MobiDBLite consensus disorder prediction 323 344 - -
HCH6g0029 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0029 726 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 145 698 IPR046959 -
HCH6g0029 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 499 707 - -
HCH6g0029 726 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524(InterPro)
HCH6g0029 726 MobiDBLite consensus disorder prediction 706 726 - -
HCH6g0029 726 SUPERFAMILY L domain-like 30 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0029 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0886 HCH-Chr14:36578168 HCH6g0029 HCH-Chr6:457729 1.10E-121 dispersed
HCH6g0029 HCH-Chr6:457729 HCH7g0172 HCH-Chr7:1136776 5.50E-115 dispersed
HCH11g0581 HCH-Chr11:10287813 HCH6g0029 HCH-Chr6:457729 7.10E-110 transposed
HCH13g1042 HCH-Chr13:31155369 HCH6g0029 HCH-Chr6:457729 7.10E-94 transposed
HCH3g0962 HCH-Chr3:9299332 HCH6g0029 HCH-Chr6:457729 5.10E-150 transposed
HCH4g1561 HCH-Chr4:12183257 HCH6g0029 HCH-Chr6:457729 5.60E-229 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH4g1561 . 386 688 Strubbelig Receptor Gene Family AT1G11130 51.8 9.6e-85 311.6
HCH3g0962 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 3.7e-84 309.7
HCH6g0029 . 409 697 Strubbelig Receptor Gene Family AT1G11130 51.9 6.9e-83 305.4
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH6g0029 . 1 726 Strubbelig Receptor Gene Family AT1G53730 60.2 2.0e-210 729.2
HCH4g1561 . 1 701 Strubbelig Receptor Gene Family AT1G53730 63.4 8.2e-196 680.6
HCH3g0962 . 24 701 Strubbelig Receptor Gene Family AT1G53730 53.5 8.9e-150 527.7
HCH6g0029 . 11 720 Strubbelig Receptor Gene Family AT3G14350 53.4 1.0e-190 663.7
HCH4g1561 . 6 699 Strubbelig Receptor Gene Family AT3G14350 57.0 3.6e-172 602.1
HCH3g0962 . 234 708 Strubbelig Receptor Gene Family AT4G22130 69.4 5.7e-176 614.4
HCH4g1561 . 394 707 Strubbelig Receptor Gene Family AT4G22130 66.8 5.4e-118 421.8
HCH6g0029 . 388 716 Strubbelig Receptor Gene Family AT4G22130 62.5 1.3e-116 417.2
HCH7g0172 . 480 788 Strubbelig Receptor Gene Family AT4G22130 60.8 8.6e-108 387.9
HCH14g0886 . 415 739 Strubbelig Receptor Gene Family AT4G22130 53.9 3.0e-100 362.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81536 PF07714 PK_Tyr_Ser-Thr 2.60E-40 CL0016 HCH PK