Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0034 ATGGCATTCACTCACGATTCCTCCACCGGAGTTCCTCTTCCCGGCAACCCATCTTCCATTTCCCACAAAAAGAAGAAACTTTTCCTCTTATCTCTCTCCTCCATTCTACTCGTCGCCGCCGTCATCGGCATTGTTGCCGGAGTCACCTCCAAAAACAAGAATTCCGACCACTTTGTCATTTCTGCTACTTCCAACGCCGTCGTCAAAAACTCATGCGCCGTTACTCTTTACCCAGACTTCTGCCACTCGACGATTTCCTCCGCCGTGGGAGCGTCGAAGAAGACAGTGTCGGGCGTGAAAGAAGTAATCGAAGTGGCGGTGAATATCGCTATCAGTGCTGTTAAGACAAACTATAAAAGCATCAAAAAGCTCACAGAGCTTAAGAATCTTACTAAACGAGAAAAGATTGCGCTCCATGATTGTCTAGAGACCGCCGATGAGACACTCAATGAGCTTCACGAGGTTGTCGAAGATCTTCATGAGTACCCAAAAAAGAAAGCTTTGTCCCAGCACGCCGACGACCTCAAAACCTTACTCAGCTCCGCCATTACCAATCAGGAAACTTGTCTGGATGGATTCTCTCATGACAAGGCCGACAAGAGGGTAAGGAAATCTTTAGAAGCAGGGCTGGTTCACATTGAAAAGTTATGCAGTAATGCATTGGCCATGATAAAAAATCTCACCGACACTGATATAGCCAATCAGAAGCTGGGAACAAACAACCGGAAGCTGATGGAAGATGATGTTGATGAAAATGAAATCAAATGGCCTGAATGGATGTCGGCTAGTGACAGGAGGCTTTTGCAATCTTCGTCAGCGACGCCGGATGTGGTGGTGGCGGAGGACGGGAGTGGAGATTTCCGTACAGTGTCAGCGGCAGTAGAAGCCTCACCGGATAGGAGTAGCAAGAGATATATAATAAGAATCAAAGCCGGAGTTTATAGAGAAAATGTGAATATTCCAAGTAAGAAGACGAATATAATGTTTTTGGGAGATGGAAGAACTACCACCATTATCACAGGGAGCAGAAATGTCGTCGACGGCAGCACAACTTTCAACTCCGCCACCGTAGCCGCCGTGGGAGGGAGGTTTCTAGCACGAGACATAACTTTCCAAAACACCGCCGGGCCATCGAAGCACCAAGCTGTGGCTCTCCGAGTTGGCTCAGATTTTTCAGCCTTTTACCGGTGTGACATGCTCGCCTATCAAGACACTCTCTACGTTCACTCCAATCGTCAATTCTACGTCAACTGCATCATCGTCGGCACCGTCGATTTCATCTTCGGCAACGCCGCAGCCGTTATCCAAAACTCCGACATCCACGCTCGTCGACCCAATTCAGGCCAAAGGAACATGGTCACAGCTCAAGGAAGAACCGACCCAAATCAAAACACCGGAATCGTAATCCAAAAATGCAGAATCGGAACCACCTCCGACTTGGCTCCGGTGATAAAAAACTTCCCGACGTTCCTCGGACGGCCATGGCAAAGATATTCGAGGACGGTGGTTATGCAGACGAGTATTAGCAATGTGATAGATCCGGCGGGGTGGCATATTTGGGACGGGAACTTTGCATTGGATACGTTGTTTTATGCCGAATATCAGAATACCGGCGCCGGTGCCGATACTTCGAAAAGGGTGACATGGAAGGGATATAAGGTGATTACTAGTGACAGTGAAGCTCAGAAATTTACGGCCGGAAATTTCATCAGTGGTGGCAGTTGGCTGAGCTCCACCGGCTTCCCATTTTCTCTTGGTTTGTAA 1764 48.24 MAFTHDSSTGVPLPGNPSSISHKKKKLFLLSLSSILLVAAVIGIVAGVTSKNKNSDHFVISATSNAVVKNSCAVTLYPDFCHSTISSAVGASKKTVSGVKEVIEVAVNIAISAVKTNYKSIKKLTELKNLTKREKIALHDCLETADETLNELHEVVEDLHEYPKKKALSQHADDLKTLLSSAITNQETCLDGFSHDKADKRVRKSLEAGLVHIEKLCSNALAMIKNLTDTDIANQKLGTNNRKLMEDDVDENEIKWPEWMSASDRRLLQSSSATPDVVVAEDGSGDFRTVSAAVEASPDRSSKRYIIRIKAGVYRENVNIPSKKTNIMFLGDGRTTTIITGSRNVVDGSTTFNSATVAAVGGRFLARDITFQNTAGPSKHQAVALRVGSDFSAFYRCDMLAYQDTLYVHSNRQFYVNCIIVGTVDFIFGNAAAVIQNSDIHARRPNSGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLAPVIKNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHIWDGNFALDTLFYAEYQNTGAGADTSKRVTWKGYKVITSDSEAQKFTAGNFISGGSWLSSTGFPFSLGL 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 485787 488628 + evm.model.ptg000003l.1758 HCH6g0034 545528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0034 587 FunFam Pectinesterase 64 228 - -
HCH6g0034 587 ProSitePatterns Pectinesterase signature 1. 301 320 IPR018040 -
HCH6g0034 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 229 IPR035513 -
HCH6g0034 587 SUPERFAMILY Pectin lyase-like 273 586 IPR011050 -
HCH6g0034 587 FunFam Pectinesterase 270 587 - -
HCH6g0034 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 228 IPR035513 -
HCH6g0034 587 SMART PMEI_2 63 223 IPR006501 GO:0004857(InterPro)
HCH6g0034 587 NCBIfam pectinesterase inhibitor domain 52 228 IPR006501 GO:0004857(InterPro)
HCH6g0034 587 CDD PMEI-like_3 71 228 - -
HCH6g0034 587 Gene3D - 270 587 IPR012334 -
HCH6g0034 587 PANTHER PECTINESTERASE 27 578 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH6g0034 587 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
HCH6g0034 587 Pfam Plant invertase/pectin methylesterase inhibitor 67 223 IPR006501 GO:0004857(InterPro)
HCH6g0034 587 Pfam Pectinesterase 276 572 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0877 HCH-Chr5:7247690 HCH6g0034 HCH-Chr6:485787 1.60E-123 dispersed
HCH6g0034 HCH-Chr6:485787 HCH7g1060 HCH-Chr7:42694465 4.80E-109 dispersed
HCH6g0034 HCH-Chr6:485787 HCH6g0035 HCH-Chr6:490211 1.90E-102 tandem
HCH4g1556 HCH-Chr4:12094256 HCH6g0034 HCH-Chr6:485787 1.00E-233 wgd
HCH6g0034 HCH-Chr6:485787 HCH8g0571 HCH-Chr8:42526737 3.00E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0034 K01051 - csv:101207996 832.402