Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0035 ATGGATTCCGTTCAATCCTTCAAAGGTTACGGCAAAGTCGACGAGCTCGACGAACAAGCTTTCCGGCGAAAAACCCGACGACGTCTCATTATCCTCACTCTCTCCATTATCCTCCTTATCGCCGCCGTAGCTGGCGCCATCGCCGGAACCCTTATCCATAAAAGAAACAACTCCTCCTCCTCGGATCCCACTCCCTTCCCACCTAACGAACCAACTCCGGCGGCTTCTCTCAAACTTCTCTGTAGTGTCACTCAATATCCATCTTCCTGTCAATCCTCTCTTGGAAATTCCAATACCACTGATCCAGAAGTTCTCTTCAAACTCTCTCTCAAAGTCGCCATGGATGAACTCTCTAAAGTAAAATTCAATTCCACCTCCGGTGACTTAAAACTCAAAGCCATCAATGAAGTCTGCCGGAATCTTTTTACCGATGCTATCGACACATTAAATGATACTATTTCTTCCATGGAAGTTGATGTTCATGACAAAAAGTTTTTATCTCCTGCGAGGATTGAAGATTTAAAGACATGGCTTAGCACCACCATTACCGATTTAGAAACCTGCCTCGACGCCGTTCGTGATCTCAACGACACGAAAACCCTCGAAGATTTCGCAAGAGCAATGGAGAATTCTACTGAGTTTGCTAGTAATAGTTTAGCTATTGTCACCAAAGTTCTCGGTGTTTTGGCTGATTTCAATATCCCAATTCACCGGAAATTGATGGGTTGGCCGGAATGGGTTAGCGCCGGTGATCGGAAGTTATTGGAGGGGAGTAATGTGAATGTGACGGCGCACGTTACCGTGTCGAAAGACGGGAAAGGTGATTTTAAGACGATAAAGGAGGCGGTGGCGGCGGTGCCGGTGAAGAGTAAAGAGAGGTATATTATATATGTGAAGGAAGGGATTTATGAAGAGAATGTGATTTTGGATAAAAGCAAGTGGAATGTTATGATGTATGGTGATGGAAAAACTAAAACCGTTATTTCCGGCAGCTTAAATTATGTCGACGGCACTCCGACCTTTGCCACCGCCACTTTCGCTGTTTCTGGGAGAGGGTTCATAGGCAAGGACATGGGGTTCGTTAACAAAGCAGGTCCATCCAAGCACCAGGCAGTTGCCTTCCGGTCTGGCTCTGACCTCTCAGTAATGTCTGGATGCTCCTTTGATGGCTACCAAGACACTCTCTATCCACATTCCAACCGTCAATTCTACCGCGAATGCGAAATCTCCGGTACCGTTGACTTCATATTCGGTAACGCAGCGGTCGTGTTTCAGTACTGCACCATCAAGACCCGGCAGCCACTTCCTAACCAATTCAACACCATTACAGCACAAGGCAAAAAAGACATCAATCAAAACACTGGCATCTCCATTCAGAAATGCACATTCATCCCTTTCAACGAAAGTCTCACGGCTCCTACCTACTTGGGGAGGCCATGGAAACCGTTTTCGACGACTGTCGTTATGCAATCCAATATCGGGTCGTTCTTGAACCCGGCTGGATGGAAGGAATGGGTACCCGGTCAGGACCCACCCGCCACTATATTTTACGGTGAGTATCAAAATACGGGGGATGGAGCGAGCGTGGAGCAAAGGGTGAAGTGGGCTGGTTATAGACTAAGTTTGACAAATGCTGAGGCTGCCAAATTCACGGTTGGTTCTTTTCTTAATGGAGATCAGTGGTTGCCGCCGACTGGTGTAAAATTTGATATATCTTTGTGA 1722 46.69 MDSVQSFKGYGKVDELDEQAFRRKTRRRLIILTLSIILLIAAVAGAIAGTLIHKRNNSSSSDPTPFPPNEPTPAASLKLLCSVTQYPSSCQSSLGNSNTTDPEVLFKLSLKVAMDELSKVKFNSTSGDLKLKAINEVCRNLFTDAIDTLNDTISSMEVDVHDKKFLSPARIEDLKTWLSTTITDLETCLDAVRDLNDTKTLEDFARAMENSTEFASNSLAIVTKVLGVLADFNIPIHRKLMGWPEWVSAGDRKLLEGSNVNVTAHVTVSKDGKGDFKTIKEAVAAVPVKSKERYIIYVKEGIYEENVILDKSKWNVMMYGDGKTKTVISGSLNYVDGTPTFATATFAVSGRGFIGKDMGFVNKAGPSKHQAVAFRSGSDLSVMSGCSFDGYQDTLYPHSNRQFYRECEISGTVDFIFGNAAVVFQYCTIKTRQPLPNQFNTITAQGKKDINQNTGISIQKCTFIPFNESLTAPTYLGRPWKPFSTTVVMQSNIGSFLNPAGWKEWVPGQDPPATIFYGEYQNTGDGASVEQRVKWAGYRLSLTNAEAAKFTVGSFLNGDQWLPPTGVKFDISL 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 490211 492553 + evm.model.ptg000003l.1757 HCH6g0035 545529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0035 573 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
HCH6g0035 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 225 IPR035513 -
HCH6g0035 573 Pfam Pectinesterase 265 559 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH6g0035 573 PANTHER PECTINESTERASE 29 564 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH6g0035 573 FunFam Pectinesterase 259 573 - -
HCH6g0035 573 FunFam Pectinesterase 73 226 - -
HCH6g0035 573 NCBIfam pectinesterase inhibitor domain 70 224 IPR006501 GO:0004857(InterPro)
HCH6g0035 573 CDD PMEI-like_3 79 224 - -
HCH6g0035 573 Gene3D - 259 573 IPR012334 -
HCH6g0035 573 SUPERFAMILY Pectin lyase-like 263 570 IPR011050 -
HCH6g0035 573 Pfam Plant invertase/pectin methylesterase inhibitor 77 221 IPR006501 GO:0004857(InterPro)
HCH6g0035 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 225 IPR035513 -
HCH6g0035 573 SMART PMEI_2 72 221 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0035 HCH-Chr6:490211 HCH6g1710 HCH-Chr6:49794629 8.50E-111 dispersed
HCH6g0034 HCH-Chr6:485787 HCH6g0035 HCH-Chr6:490211 1.90E-102 tandem
HCH3g0042 HCH-Chr3:280176 HCH6g0035 HCH-Chr6:490211 4.40E-13 transposed
HCH3g0862 HCH-Chr3:6805748 HCH6g0035 HCH-Chr6:490211 1.50E-120 transposed
HCH6g0035 HCH-Chr6:490211 HCH8g0574 HCH-Chr8:42558672 1.20E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0035 - - - 0.0