Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0039 ATGATGCTTCATTCTGTTGGAGCTGCTAGACAAACTTGTAGTCTTCTTGCTGTTACTTGTGGAAGTGTGCCTCAAGTAAAAAGCGAAAAGGATGTGGCTGAGGATCAGCTGAAATATCCCTTCCCAGAATTAGTTCCTTCAGGACGGTTGGAGGTCCGTACTCTGTCTAATCCTAGCAAGGATGAATTTCGAAAAGCTATAGAATCATGTCAACCGAGCTTCGTGTACTTGCTAGGGGAACTACTTGAAAATGATGAAGTTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCCTGAAGATTTATGTGAACTATTCCATACTACACTGCCTACCACTGTGTATTTGGAAATCCCAAATGGAAGCAGATTAGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATGTACTGGAATAACACATTTTCATGCTATGCCGCGGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTGCTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCCTTTAGGCTTCATTGTGTGCAAAGCAATTATGTCCTTTCCAGGAACGCTGACAATCTTAGAACTAGAAGTGATCCGGAGCCTCATCTTCTTGGGGAACGTTCAAAGATTAATGTAGAATCCCCTGAGATAGATGCAAGCGAAGATGGAGACAGTTCTTCGGGAACTCTTTCTGCCATAAGTATACATGATAATAATGTGACCATGAGATTTCTTATCTGTGGAATGTCATACACACGGGATGCATACTTGTTGGAATCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAGTGCGTGGGAGCAAACTTCAGGGAAAGTATAGTGCCCCTCCACCTCCTCTTCAAGCAGGATCCTTTTCTCGCGGTGTTGTGACAATGCGATGTGATTTAGCAACCTGTAGCTCAGCCCATATCTCAATATTGGTGTCTGGTAGTGCTCAAACTTGTTTTGACGATCAGCTTTTGGAAAATCATATCAAACATGAGATTATTGAAAAGAGCCAATTAGTTCATGCACTGCATGATTGTGAGGGCAACGAACGACGTATGCATGAGCCTCGAAGATCCGCTTCAGTTGCTTGCGGGGCATCAGTATTTGAGGTTTCCATGAAGGTTCCTGCTTGGGCATCACAGGTGTTGAGGCAACTAGCACCAGATATTTCTCATCGTAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAAGGTTTGCCCGTTGCTTCTTTTGAGAAGGAAGATGCTGAGCGGATGCTCTTTTTCTGTTCAAAAGATGGAAAAGTTGAACATTCTGATCAGTTGTTTTTAACTGCATTGCCCTGCTGGTTTAAACCACCTACTCCTAGTAGAAAGAGGTTGAAACCAAACCAAGGGATAAGCCCTGTTTCACATGACAGTTTTGCAAATCTCTCTTCCATCAGAAGATTAGGTGAAGAGGAGCCTAGACCAGTAAATGGATTTAAGACACCCTTACTCCCAGCTAGGAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACGTGTACATCGTAATAAAATGACGCCCTTCTCTGGAATGATTGAAGGAGATGGGCAGAATGGAGGCCAAGCCAAGGCCAGTCTACCTGTTATTACCCCGACAAAGCATGTAGCTCTAGGATCAACTTCTGCATCACAAAGAAAATCTTTTTCCAGCTCATCTCAGTCTAAGCAGATCATTGCCTTAAATCCACTACCCCTAAAGAAACATGGTTGTGGAAGAAACCCAATACAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTAGTAATTAGAGGACATTCTCGACTTATTCCTCAAGGTGGACTTGCCGAGTTCCCTGATGCGATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAAGAGGTGGTTACCCGAGGAGGCTTTCATGTTGGGAATGGTATCAATTGGAAGGGGCAGATCTTCTCCAAGATGCACAATTACACCATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGGCATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTAAACTGTGGCATTTGCGGCGAATGGGCCCATTTTGGGTGTGATAGACGGCAGGGTCTTGGTGCGTTTAAGGATTATGCCAAAACAGATGGTCTAGAGTATGTATGTCCACATTGTAGCATCACAAACTACAAGAAGAAGCCACACAAAACGGCAAATGGGTCTCCGCTAGGAATAATGAATTCACGAACACTTTGA 2346 43.56 MMLHSVGAARQTCSLLAVTCGSVPQVKSEKDVAEDQLKYPFPELVPSGRLEVRTLSNPSKDEFRKAIESCQPSFVYLLGELLENDEVGSLVWNGVDLSPEDLCELFHTTLPTTVYLEIPNGSRLAEALHSKGIPYVMYWNNTFSCYAAAHFRNALLSVVQSSSAHTWDAFQLAHAAFRLHCVQSNYVLSRNADNLRTRSDPEPHLLGERSKINVESPEIDASEDGDSSSGTLSAISIHDNNVTMRFLICGMSYTRDAYLLESLEDGLNALLNIEVRGSKLQGKYSAPPPPLQAGSFSRGVVTMRCDLATCSSAHISILVSGSAQTCFDDQLLENHIKHEIIEKSQLVHALHDCEGNERRMHEPRRSASVACGASVFEVSMKVPAWASQVLRQLAPDISHRSLVALGIGGVQGLPVASFEKEDAERMLFFCSKDGKVEHSDQLFLTALPCWFKPPTPSRKRLKPNQGISPVSHDSFANLSSIRRLGEEEPRPVNGFKTPLLPARKRLKVATMRPIPRVHRNKMTPFSGMIEGDGQNGGQAKASLPVITPTKHVALGSTSASQRKSFSSSSQSKQIIALNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLVIRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITNYKKKPHKTANGSPLGIMNSRTL 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 515318 521535 + evm.model.ptg000003l.1753 HCH6g0039 545533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0039 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677(InterPro)
HCH6g0039 781 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677(InterPro)
HCH6g0039 781 SMART bright_3 595 699 IPR001606 GO:0003677(InterPro)
HCH6g0039 781 SMART ARID_2 591 694 - -
HCH6g0039 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 765 IPR013083 -
HCH6g0039 781 MobiDBLite consensus disorder prediction 197 232 - -
HCH6g0039 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677(InterPro)
HCH6g0039 781 CDD ARID 596 694 - -
HCH6g0039 781 Gene3D - 591 694 IPR036431 GO:0003677(InterPro)
HCH6g0039 781 CDD PHD_ARID4_like 704 755 - -
HCH6g0039 781 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
HCH6g0039 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 773 IPR042293 -
HCH6g0039 781 MobiDBLite consensus disorder prediction 197 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1549 HCH-Chr4:12016703 HCH6g0039 HCH-Chr6:515318 4.4e-312 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33664 PF01388 ARID 6.90E-14 CL0123 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0039 - - - 0.0