Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0039 ATGATGCTTCATTCTGTTGGAGCTGCTAGACAAACTTGTAGTCTTCTTGCTGTTACTTGTGGAAGTGTGCCTCAAGTAAAAAGCGAAAAGGATGTGGCTGAGGATCAGCTGAAATATCCCTTCCCAGAATTAGTTCCTTCAGGACGGTTGGAGGTCCGTACTCTGTCTAATCCTAGCAAGGATGAATTTCGAAAAGCTATAGAATCATGTCAACCGAGCTTCGTGTACTTGCTAGGGGAACTACTTGAAAATGATGAAGTTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCCTGAAGATTTATGTGAACTATTCCATACTACACTGCCTACCACTGTGTATTTGGAAATCCCAAATGGAAGCAGATTAGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATGTACTGGAATAACACATTTTCATGCTATGCCGCGGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTGCTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCCTTTAGGCTTCATTGTGTGCAAAGCAATTATGTCCTTTCCAGGAACGCTGACAATCTTAGAACTAGAAGTGATCCGGAGCCTCATCTTCTTGGGGAACGTTCAAAGATTAATGTAGAATCCCCTGAGATAGATGCAAGCGAAGATGGAGACAGTTCTTCGGGAACTCTTTCTGCCATAAGTATACATGATAATAATGTGACCATGAGATTTCTTATCTGTGGAATGTCATACACACGGGATGCATACTTGTTGGAATCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAGTGCGTGGGAGCAAACTTCAGGGAAAGTATAGTGCCCCTCCACCTCCTCTTCAAGCAGGATCCTTTTCTCGCGGTGTTGTGACAATGCGATGTGATTTAGCAACCTGTAGCTCAGCCCATATCTCAATATTGGTGTCTGGTAGTGCTCAAACTTGTTTTGACGATCAGCTTTTGGAAAATCATATCAAACATGAGATTATTGAAAAGAGCCAATTAGTTCATGCACTGCATGATTGTGAGGGCAACGAACGACGTATGCATGAGCCTCGAAGATCCGCTTCAGTTGCTTGCGGGGCATCAGTATTTGAGGTTTCCATGAAGGTTCCTGCTTGGGCATCACAGGTGTTGAGGCAACTAGCACCAGATATTTCTCATCGTAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAAGGTTTGCCCGTTGCTTCTTTTGAGAAGGAAGATGCTGAGCGGATGCTCTTTTTCTGTTCAAAAGATGGAAAAGTTGAACATTCTGATCAGTTGTTTTTAACTGCATTGCCCTGCTGGTTTAAACCACCTACTCCTAGTAGAAAGAGGTTGAAACCAAACCAAGGGATAAGCCCTGTTTCACATGACAGTTTTGCAAATCTCTCTTCCATCAGAAGATTAGGTGAAGAGGAGCCTAGACCAGTAAATGGATTTAAGACACCCTTACTCCCAGCTAGGAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACGTGTACATCGTAATAAAATGACGCCCTTCTCTGGAATGATTGAAGGAGATGGGCAGAATGGAGGCCAAGCCAAGGCCAGTCTACCTGTTATTACCCCGACAAAGCATGTAGCTCTAGGATCAACTTCTGCATCACAAAGAAAATCTTTTTCCAGCTCATCTCAGTCTAAGCAGATCATTGCCTTAAATCCACTACCCCTAAAGAAACATGGTTGTGGAAGAAACCCAATACAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTAGTAATTAGAGGACATTCTCGACTTATTCCTCAAGGTGGACTTGCCGAGTTCCCTGATGCGATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAAGAGGTGGTTACCCGAGGAGGCTTTCATGTTGGGAATGGTATCAATTGGAAGGGGCAGATCTTCTCCAAGATGCACAATTACACCATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGGCATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTAAACTGTGGCATTTGCGGCGAATGGGCCCATTTTGGGTGTGATAGACGGCAGGGTCTTGGTGCGTTTAAGGATTATGCCAAAACAGATGGTCTAGAGTATGTATGTCCACATTGTAGCATCACAAACTACAAGAAGAAGCCACACAAAACGGCAAATGGGTCTCCGCTAGGAATAATGAATTCACGAACACTTTGA 2346 43.56 MMLHSVGAARQTCSLLAVTCGSVPQVKSEKDVAEDQLKYPFPELVPSGRLEVRTLSNPSKDEFRKAIESCQPSFVYLLGELLENDEVGSLVWNGVDLSPEDLCELFHTTLPTTVYLEIPNGSRLAEALHSKGIPYVMYWNNTFSCYAAAHFRNALLSVVQSSSAHTWDAFQLAHAAFRLHCVQSNYVLSRNADNLRTRSDPEPHLLGERSKINVESPEIDASEDGDSSSGTLSAISIHDNNVTMRFLICGMSYTRDAYLLESLEDGLNALLNIEVRGSKLQGKYSAPPPPLQAGSFSRGVVTMRCDLATCSSAHISILVSGSAQTCFDDQLLENHIKHEIIEKSQLVHALHDCEGNERRMHEPRRSASVACGASVFEVSMKVPAWASQVLRQLAPDISHRSLVALGIGGVQGLPVASFEKEDAERMLFFCSKDGKVEHSDQLFLTALPCWFKPPTPSRKRLKPNQGISPVSHDSFANLSSIRRLGEEEPRPVNGFKTPLLPARKRLKVATMRPIPRVHRNKMTPFSGMIEGDGQNGGQAKASLPVITPTKHVALGSTSASQRKSFSSSSQSKQIIALNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLVIRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITNYKKKPHKTANGSPLGIMNSRTL 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 515318 521535 + evm.model.ptg000003l.1753 HCH6g0039 545533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0039 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677(InterPro)
HCH6g0039 781 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677(InterPro)
HCH6g0039 781 SMART bright_3 595 699 IPR001606 GO:0003677(InterPro)
HCH6g0039 781 SMART ARID_2 591 694 - -
HCH6g0039 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 765 IPR013083 -
HCH6g0039 781 MobiDBLite consensus disorder prediction 197 232 - -
HCH6g0039 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677(InterPro)
HCH6g0039 781 CDD ARID 596 694 - -
HCH6g0039 781 Gene3D - 591 694 IPR036431 GO:0003677(InterPro)
HCH6g0039 781 CDD PHD_ARID4_like 704 755 - -
HCH6g0039 781 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
HCH6g0039 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 773 IPR042293 -
HCH6g0039 781 MobiDBLite consensus disorder prediction 197 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0039 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1549 HCH-Chr4:12016703 HCH6g0039 HCH-Chr6:515318 4.4e-312 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g1418 . 28 367 ARID Transcription Factor Family AT1G04880 59.3 1.4e-105 380.2
HCH12g0028 . 74 352 ARID Transcription Factor Family AT1G20910 64.9 2.4e-101 365.9
HCH13g1287 . 212 477 ARID Transcription Factor Family AT1G20910 61.4 3.3e-90 328.9
HCH12g0090 . 18 313 ARID Transcription Factor Family AT1G76110 65.8 1.1e-110 396.7
HCH12g0028 . 58 382 ARID Transcription Factor Family AT1G76510 67.8 2.3e-124 442.6
HCH13g1287 . 187 507 ARID Transcription Factor Family AT1G76510 61.3 2.4e-110 396.0
HCH6g0920 . 53 335 ARID Transcription Factor Family AT3G13350 55.3 3.2e-83 305.4
HCH6g0039 . 2 773 ARID Transcription Factor Family AT3G43240 59.5 6.0e-266 913.7
HCH4g1549 . 2 766 ARID Transcription Factor Family AT3G43240 59.7 4.3e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33664 PF01388 ARID 6.90E-14 CL0123 HCH TR