Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0062 ATGGACTCGTCTCTTGAAGCTACGGAATCAGCCGAAGAGTTAATATTGAACTGGGAATCATCATCATCATCATCAGCTGCAGCAGCAGAAGAAACGAAAGAAAAAATGATATTCGATTGTGATCGAGAAGAAATCGAGCGTTACTTAGAAGCAGTAGACGAAATCCAGAAATCTTTATCCAGGGCTTCGTTATCCAATGAACGAAACAAAGCTGAATCAACTCTTCAAATCGCCATGGCTAGATTTGAAGATGAATTCCGTCACATTTTATCGAATCACACAAACCCTATCGAGGTCGATTCTCTTACTGATCCAAGCCCTTCCTCCCGTCGTTCGATTTCCACTTCCTCCAGTGCCGTTTTCGAAGACGAAAATTACGATACTGAATCTGATTTGAATTCTGATTTGAATCTTGATTTGAGTGATAGCTCTAACTCTAGCCCTAGCTTCCGTTCGAGTGTCCGATCGAGCTATCGGACTACGAGCAGTATCCGAGAGCTTGATCTCATGCCGTCCGATGCGATTATCGATCTCCGGTCAATCGCCGAGAGGATGATATCGGCCGGCTACTTACGTGAGTGTATTCAAGTTTACGCTAGTGTTAGGAAGTCGACTTTTGATTCTAGTTTTCGGAGACTTGGAATTGAGAAATTGAGTATTGGTGATATTCAAAGGTTGGATTGGAATGAATTGGAGACTAAGATTAGGAGGTGGATTAGGGCTGCTAAGGTTTCAATTAGGACTTTGTTTTCTAGTGAGAAGAAGCTCTGTGAGCAAATCTTTTATGGTATTGGTACTGCAATTGATGATGCTTGTTTTATGGAGACTGTTAAAGGCCCTGTTACTCAGTTGTTTAATTTCGCTGAGGCAATTAGTATTAGTCGTCGATCGCCCGAGAAGTTATTTAAGATTCTTGATCTTCATGATGCTTTGACTGATTTGATTCCGGATATTGATGTTATATTCGAATCCAAATCGGCTGACTATATTCGAGTTCAGGCTGCAGAGATAGTGTCGAGGTTGGCGGAGGCTGTGAGGGGGACTTTATCGGAGTTTGAGAACGCTGTGCTGCGTGAGCCTTCATTGCTTCCGGTGCCAGGTGGTACACTTCATCCATTGACTAGGTATGTCATGAATTATATAAGCCTCATTTCAGATTATAAAGTGACTTTAGATGAGCTTATTGTGTCGAAACCGTCGACGGGGTCGAGGTATTCGGCTGATTCTACAACCCCGGATATGGACTTTGCTGAATTAGAAGGTAAAACACCATTAGCCCTTCATATGATATGGAGTATAGTGATTCTGCAATTCAATTTGGAAGGGAAGTCTAGGCACTATAGAGATACTTCTTTAGCTCATTTGTTCATCATGAACAATGTTCATTACATTGTTCAGAAGATTAAAGGGTCAACGGAATTGAGAGAAATGATTGGAGATGTTTATCTGAAAAGGTTAACTGGGAAGTTTCGACAGGCTGCCACGAGCTACGAGAGAGCGACTTGGATGAATGTGTTGTATTGTCTGAGAGATGAGGGGTTACATGTGAGTGGGAGCTTCTCTTCCGGCATCTCAAAGAGTGCTGTTAGAGACAGATTCAAGTCTTTCAATGCCATGTTTGAGGAAGTTCATAGGACACAATCCACATGGTTGATACCAGATTCTCAACTCAGGGAGGAGCTTCGCATATCTATAACCGAAAAGTTGATACCAGCTTACAGGTCGTTTATTGGCCGCCATGGGCACCTCATAGAGAGTGGAAGGCACCCAGAAAACTACATCAAGTTCACAACTGATGACTTAGAAAATGCCATCTTGGATTTCTTTGAGGGTTCCACAGCTTCTCAGAACATGAGGAGGAAATCTCACTGA 1872 42.52 MDSSLEATESAEELILNWESSSSSSAAAAEETKEKMIFDCDREEIERYLEAVDEIQKSLSRASLSNERNKAESTLQIAMARFEDEFRHILSNHTNPIEVDSLTDPSPSSRRSISTSSSAVFEDENYDTESDLNSDLNLDLSDSSNSSPSFRSSVRSSYRTTSSIRELDLMPSDAIIDLRSIAERMISAGYLRECIQVYASVRKSTFDSSFRRLGIEKLSIGDIQRLDWNELETKIRRWIRAAKVSIRTLFSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSADYIRVQAAEIVSRLAEAVRGTLSEFENAVLREPSLLPVPGGTLHPLTRYVMNYISLISDYKVTLDELIVSKPSTGSRYSADSTTPDMDFAELEGKTPLALHMIWSIVILQFNLEGKSRHYRDTSLAHLFIMNNVHYIVQKIKGSTELREMIGDVYLKRLTGKFRQAATSYERATWMNVLYCLRDEGLHVSGSFSSGISKSAVRDRFKSFNAMFEEVHRTQSTWLIPDSQLREELRISITEKLIPAYRSFIGRHGHLIESGRHPENYIKFTTDDLENAILDFFEGSTASQNMRRKSH 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 687870 689741 + evm.model.ptg000003l.1730 HCH6g0062 545556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0062 623 SUPERFAMILY Cullin repeat-like 32 610 IPR016159 -
HCH6g0062 623 Coils Coil 61 81 - -
HCH6g0062 623 PANTHER EXOCYST COMPLEX PROTEIN EXO70 8 612 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
HCH6g0062 623 MobiDBLite consensus disorder prediction 96 123 - -
HCH6g0062 623 Pfam Exo70 exocyst complex subunit C-terminal 237 607 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH6g0062 623 Gene3D Exocyst complex component Exo70 115 619 - -
HCH6g0062 623 Pfam Exocyst complex component Exo70 N-terminal 9 91 - -
HCH6g0062 623 MobiDBLite consensus disorder prediction 96 153 - -
HCH6g0062 623 MobiDBLite consensus disorder prediction 131 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0224 HCH-Chr11:2061486 HCH6g0062 HCH-Chr6:687870 3.20E-82 dispersed
HCH1g0497 HCH-Chr1:53786940 HCH6g0062 HCH-Chr6:687870 4.70E-86 dispersed
HCH2g1121 HCH-Chr2:53938680 HCH6g0062 HCH-Chr6:687870 5.70E-84 dispersed
HCH3g1304 HCH-Chr3:49769931 HCH6g0062 HCH-Chr6:687870 1.10E-85 dispersed
HCH4g0579 HCH-Chr4:3833772 HCH6g0062 HCH-Chr6:687870 1.60E-34 dispersed
HCH5g1180 HCH-Chr5:40549821 HCH6g0062 HCH-Chr6:687870 5.40E-93 dispersed
HCH6g0062 HCH-Chr6:687870 HCH8g1477 HCH-Chr8:49150171 1.50E-116 dispersed
HCH6g0062 HCH-Chr6:687870 HCH3g0443 HCH-Chr3:2826887 8.90E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0062 K07195 - csv:101204229 966.837