Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0068 ATGGAACGATGGGTTGAAGAGAAAGACATCATAAACTTACCGTATATCGCAATTGCGAAAGAGACGATGAGACTTCACCCTGTGGCACCAATGTTAGTGCCAAGAATGTCAAGAGAAGATTGTCAAATTGCAGGCTATGACATAGCCAAAGGCACTAGAATTCTACTCAATGTATGGACAATTGGAAGGGACCCTTCAGTATGGGAAAATCCAAATGAATTCTATCCAGAAAGGTTTATTGGAAAGAATATTGATGTGAAAGGGCAAGATTTTGAGCTTCTTCCATTTGGATCTGGCAGAAGGATGTGTCCTGGCTATAGTCTTGGCCTCAAAGTTATTCAATCAAGTTTGGCCAATTTGTTGCATGGATTTTCTTGGAAATTGCCTGGGAATATGAAGAAAGAAGATTTGAATATGGAAGAAGTTTTTGGTCTATCAACTCCTAAGAAATATCCAGTGAGTGTTGTTGTTGAGCCTAGACTTCCTCCTCATCTTTACTCAATGTGA 507 39.45 MERWVEEKDIINLPYIAIAKETMRLHPVAPMLVPRMSREDCQIAGYDIAKGTRILLNVWTIGRDPSVWENPNEFYPERFIGKNIDVKGQDFELLPFGSGRRMCPGYSLGLKVIQSSLANLLHGFSWKLPGNMKKEDLNMEEVFGLSTPKKYPVSVVVEPRLPPHLYSM 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 751086 751592 + evm.model.ptg000003l.1724 HCH6g0068 545562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0068 168 SUPERFAMILY Cytochrome P450 3 160 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 PRINTS P450 superfamily signature 103 114 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 PRINTS P450 superfamily signature 17 28 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 PRINTS P450 superfamily signature 94 103 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 Pfam Cytochrome P450 5 148 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 FunFam Predicted protein 1 155 - -
HCH6g0068 168 Gene3D Cytochrome P450 1 162 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 96 105 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH6g0068 168 PRINTS E-class P450 group I signature 16 34 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 PRINTS E-class P450 group I signature 93 103 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 PRINTS E-class P450 group I signature 103 126 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 PRINTS E-class P450 group I signature 57 81 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0068 168 PANTHER CYTOCHROME P450 98A9 2 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0068 HCH-Chr6:751086 HCH12g0870 HCH-Chr12:5714016 2.40E-74 dispersed
HCH6g0068 HCH-Chr6:751086 HCH6g0069 HCH-Chr6:837659 3.20E-90 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0068 K20623 - csv:101203328 298.13