Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0075 ATGAGTAATTGGTTGGGGTTTTCTCTGACTCCACACTTGAGAATTCATGAAGGTTTACAGAATGGAACAACTCATGATGAAGATTTAGACAACCATAACGGCGGCGGTGGTGATCGAAGCTTTCCTCCGCCACCGCTCATGCCGTTGCGCTCCGATGGTTCTCTTTGTATTCCTCCCATGGATCCATTAGGTCACGCCGCCGTTGACTCCGCCCAGGATTGGAGAACATATGAGAACGGAATGAATGGAACAAACCCAGATGAAGAAAGTCCAAAACTTGAAGATTTTCTGGGAAATTGCTATTCAAATTCAGAAGATCAACAGATCCCAAATACCAGCTTCATTCCCAATTCTCATTCTGATTCTGATAATTACCATTATCAAGATCAAAACCCACAATCTCTAATTCCTAATCCTAATAATAACAACACAATTTACAAGTCTTGGTTGGGGCCAAGCTCTCAAAATGAGTGTGGTTTTCAATCACTCTCTCTTAGTATGAGCCCCAGCTCACTAAACGATATCACTTCCTTGTCGTCGCCGTCGTTGTCGCCGTCACAAACGGCGGATTCCCGGAAACGGCCGGTGGCCAAGCCTTTGATCAAAGAACCAGTTCCGAGAAAGTCTATTGATACGTTTGGACAGAGAACTTCTCAATATCGCGGTGTCACGAGGCATAGGTGGACAGGAAGATATGAGGCACATTTATGGGACAACAGCTGTAGAAAAGAAGGCCAAACTAGGAAAGGAAGGCAAGTTTATCTTGGTGGTTATGATAAAGAAGAAAAAGCAGCACGAGCTTATGATTTAGCTGCACTAAAATACTGGGGGCCAACAACTCATATAAATTTTCCGTTGAGCTCTTACGAAAATGAGCTAGAGGAGATGAAAAACATGAGCAGACAGGAATTCGTAGCCAACTTGAGAAGGAAAAGCAGTGGATTTTCAAGAGGAGCATCAATGTACAGAGGAGTAACAAGACATCATCAGCATGGAAGGTGGCAAGCTAGGATTGGAAGGGTTGCAGGAAATAAAGACTTGTACCTTGGAACATTTAGCACACAAGAGGAAGCGGCTGAGGCATACGATATAGCAGCGATCAAGTTTCGGGGAACGAGTGCGGTGACGAATTTCGACATCAGTCGGTATGATGTGAAGAGGATATGCTCAAGCTCTACCCTTATTGCCAGCGACCTCGCGAAACGTTCTCCATTGAAAGATGGCTTTCCCTCCACTGCTGAAGACTATAATACTTCCTGTGCCTCGCCGACATCGCCCCAGCCGCTCCTGGCCATCACCGCTGTCACTGAGAGCCACAATGAGTTGGCTGACATGCTGTGGTGTGACCATGCAGATGATAATCAGAATGCGGCAAAGAACGCGAACAATGACTTGACTTTGATGGCTTCGAGCAGCAGGAATTCGTCGAGGCCGCAAAGTCCGAAGTGTTGTTCGGGTGATCAAAATGGGGAGTTCGGTATCGGCGGTGGAGACTACTCTCAAGGTTATTTCTCATTGCAAGGAGGGAAATATGAAGATGGGAATAATGGGAGCGATCAAAATCGGCAGCTGGGAAATGTAGCTTTGCCTCATCATCATATTCCCATGTTTGCTTTGTGGAATGAATGA 1629 45.79 MSNWLGFSLTPHLRIHEGLQNGTTHDEDLDNHNGGGGDRSFPPPPLMPLRSDGSLCIPPMDPLGHAAVDSAQDWRTYENGMNGTNPDEESPKLEDFLGNCYSNSEDQQIPNTSFIPNSHSDSDNYHYQDQNPQSLIPNPNNNNTIYKSWLGPSSQNECGFQSLSLSMSPSSLNDITSLSSPSLSPSQTADSRKRPVAKPLIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSSYENELEEMKNMSRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGFPSTAEDYNTSCASPTSPQPLLAITAVTESHNELADMLWCDHADDNQNAAKNANNDLTLMASSSRNSSRPQSPKCCSGDQNGEFGIGGGDYSQGYFSLQGGKYEDGNNGSDQNRQLGNVALPHHHIPMFALWNE 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 918144 922015 - evm.model.ptg000003l.1717 HCH6g0075 545569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0075 542 FunFam AP2-like ethylene-responsive transcription factor ANT 218 287 - -
HCH6g0075 542 SUPERFAMILY DNA-binding domain 218 287 IPR016177 GO:0003677(InterPro)
HCH6g0075 542 ProSiteProfiles AP2/ERF domain profile. 321 379 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 Gene3D AP2/ERF domain 218 287 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 Gene3D AP2/ERF domain 321 381 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 Pfam AP2 domain 219 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 Pfam AP2 domain 322 371 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 ProSiteProfiles AP2/ERF domain profile. 219 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 MobiDBLite consensus disorder prediction 21 45 - -
HCH6g0075 542 MobiDBLite consensus disorder prediction 170 206 - -
HCH6g0075 542 FunFam AP2-like ethylene-responsive transcription factor 320 381 - -
HCH6g0075 542 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 PRINTS Ethylene responsive element binding protein signature 361 381 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 SMART rav1_2 219 291 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 SMART rav1_2 321 385 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 MobiDBLite consensus disorder prediction 170 191 - -
HCH6g0075 542 MobiDBLite consensus disorder prediction 469 488 - -
HCH6g0075 542 SUPERFAMILY DNA-binding domain 320 381 IPR016177 GO:0003677(InterPro)
HCH6g0075 542 MobiDBLite consensus disorder prediction 102 140 - -
HCH6g0075 542 CDD AP2 320 381 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0075 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 141 436 - -
HCH6g0075 542 MobiDBLite consensus disorder prediction 469 486 - -
HCH6g0075 542 CDD AP2 218 287 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0534 HCH-Chr12:3144113 HCH6g0075 HCH-Chr6:918144 5.70E-102 dispersed
HCH14g0388 HCH-Chr14:32888056 HCH6g0075 HCH-Chr6:918144 2.80E-107 dispersed
HCH2g1142 HCH-Chr2:54083671 HCH6g0075 HCH-Chr6:918144 8.70E-39 dispersed
HCH2g1390 HCH-Chr2:55674648 HCH6g0075 HCH-Chr6:918144 1.50E-89 dispersed
HCH6g0075 HCH-Chr6:918144 HCH8g1037 HCH-Chr8:46330493 5.00E-97 dispersed
HCH6g0075 HCH-Chr6:918144 HCH4g0569 HCH-Chr4:3729795 9.20E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33668 PF00847 AP2 4.20E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0075 K09285 - csv:101205762 677.937