Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0091 ATGATGGAAGAGATGTCTCCTGCAGTTTCTTTAACCCTTAGTTTGGATAATCCCAAGTCTGATAACTCAGGAAGTGCAGGCCATGTTGAATTCACACGGCTTAAGTTGGTGACGGACGCAGTTAATTTGTTCTCTGCGTCTTCTCCCGACGCTCTTTCTGTTGGTAATGGTAGCTGCCATGGTTTCAATGGTAAAGTTGAGAGTGTAACTGTATCGGAATTGGCAGATATTGGTGAAGGGAAAGCTGGTTATTGGGGGTTCTTGCCGGAGAATGGGAAGAGTTTCGTTACGAGTAAGGAAGTTGAAACCTTATCTACGATAGTTGGTACTGATGAAATTATAGGTGATGGGTTGTTAACTCTTGATGTAGGTTCAAATATTAATTTGCCAGAAGTTGTCAGTATTGAAGATGTTAGTAATGGTCATATTGTTGCCAAGGCTATTATTTTGGTGGATTCAGGAAACATTCCTGCTGCTGAACTCATTGTGGCTGCGGTAAGCCCGGATTTAGAAATATCCGGCAAGTCGGAGCTAAAGACCCCCGTGGTGGTTGTTCAATCAAAAGGAGACGATAATGTTAATCGAGGTATTCGTAGTGTCTTTAAACTGGATTGTGTTCCCCTTTGGGGTTCTGTATCAATTTGTGGTAGAAGACCGGAAATGGAAGATGCGATTGCTACTGTTCCCTATTTTACGAAGATCCCTATCAACAAGCTTGTGAGCAATGGTTTGATTAATGGAACGAGCCAAAATTCAATACACCTCACCAGTCATTTTTTCGGTGTTTATGATGGCCATGGTGGCTCTCAGGTTGCTGATTATTGTCGTGAGCGCATACATTTGGCATTAGCGGAAGAGATAGGAATGAATAAGAATGATCTAAATGATGGAAATGGTGGAGAAAACTGGCAGCAGAATTGGGAGAGAACCTTTAATAGTTGCTTTTTAAAGGTTGATGATGAAATAGGAGGAAAAGTTGGTAGAGAAGTCGATGGGATTGAAGGAGATATTTCAGAAGCCAGCTTTGATCCCGTTGCCCCGGAAACTGTTGGCTCCACTGCTGTGGTTGCCGTGGTCTGTTCATCTCACATCATAGTTGCAAACTCTGGTGATTCAAGAGCAGTGCTATGCCGTGGCAAAGAAGCCATTGCACTCTCGGTTGATCATAAACCAAATAGGGAAGATGAATATGCTAGGATTGAATCATCTGGAGGCAAGGTTATCCAATGGAACGGGCACCGTGTTTTTGGAGTTCTCGCAATGTCAAGATCCATTGGTGATAGATATTTGAAGCCCTGGATTATTCCAGATCCGGAAGTCATGTTTGTTCCTCGTGCGAAAGAAGACGAATGCCTCATCTTAGCCAGTGATGGACTGTGGGATGTCATGACAAATGAGGAAGTGTGCGAAGTGGCTCGAAGGCGGATTCTTCTTTGGCACAAAAAAAATGGAGGTGCCCCTCTAGTCGATAGGGGTACGGGAGTTGACCCAGCTGCACAAGCAGCGGCAGACTATCTATCTATGCTTGCACTCCAAAAGGGAAGCAAAGACAACATCTCTGTGATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTAA 1611 43.7 MMEEMSPAVSLTLSLDNPKSDNSGSAGHVEFTRLKLVTDAVNLFSASSPDALSVGNGSCHGFNGKVESVTVSELADIGEGKAGYWGFLPENGKSFVTSKEVETLSTIVGTDEIIGDGLLTLDVGSNINLPEVVSIEDVSNGHIVAKAIILVDSGNIPAAELIVAAVSPDLEISGKSELKTPVVVVQSKGDDNVNRGIRSVFKLDCVPLWGSVSICGRRPEMEDAIATVPYFTKIPINKLVSNGLINGTSQNSIHLTSHFFGVYDGHGGSQVADYCRERIHLALAEEIGMNKNDLNDGNGGENWQQNWERTFNSCFLKVDDEIGGKVGREVDGIEGDISEASFDPVAPETVGSTAVVAVVCSSHIIVANSGDSRAVLCRGKEAIALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKEDECLILASDGLWDVMTNEEVCEVARRRILLWHKKNGGAPLVDRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1159140 1161325 - evm.model.ptg000003l.1701 HCH6g0091 545585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0091 536 Gene3D - 195 536 IPR036457 -
HCH6g0091 536 FunFam Protein phosphatase 2C 16 196 536 - -
HCH6g0091 536 CDD PP2Cc 210 526 IPR001932 -
HCH6g0091 536 MobiDBLite consensus disorder prediction 10 24 - -
HCH6g0091 536 MobiDBLite consensus disorder prediction 1 24 - -
HCH6g0091 536 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169(InterPro)
HCH6g0091 536 PANTHER PROTEIN PHOSPHATASE 181 525 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH6g0091 536 SUPERFAMILY PP2C-like 194 527 IPR036457 -
HCH6g0091 536 Pfam Protein phosphatase 2C 249 519 IPR001932 -
HCH6g0091 536 ProSiteProfiles PPM-type phosphatase domain profile. 208 526 IPR001932 -
HCH6g0091 536 SMART PP2C_4 198 524 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0091 HCH-Chr6:1159140 HCH9g1262 HCH-Chr9:35875538 9.90E-29 dispersed
HCH8g0706 HCH-Chr8:43775944 HCH6g0091 HCH-Chr6:1159140 2.60E-74 transposed
HCH12g0485 HCH-Chr12:2838184 HCH6g0091 HCH-Chr6:1159140 5.80E-137 wgd
HCH4g0520 HCH-Chr4:3411272 HCH6g0091 HCH-Chr6:1159140 2.70E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0091 K14497 - csv:101203499 833.943