Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0093 ATGGGAAACCAAAAGCAGAAGTGGACATCGGAGGAAGAAGAAGCTCTCCTCGCCGGAGTAGGAAAACACGGTCCCGGAAAATGGAAAAACATTCTCAAAGATCCCGAATTCGCTCCCTTTCTTACTCACCGTTCCAACATTGATCTTAAGGACAAATGGCGAAATTTGAGCGTCAGTACTGCTACACAAGGCTCAAAAGAGAAGTCTAGGGCGGCCCCTAAATCAAAAGCTATTGTTGTTGCTTCAGTTTCTAACAACCAAAATTCAACTCCTGCTTCAGTTCAAAATAACACACCTGCTAATACTGCAGGGGATGATCCATCAAGTACCACACATGATGTGAAAAATGCTCCAAGGTACAATGCAATGATTTTCGAAGCCCTTTCGACCATAAAAGATTCAGATGGATGTGAAATAGGTGCAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGTTGTTAAGCTCAAGGTTGAGAAGACTCGTTTCACAAGGAAAGCTTGAAAAGGTTCAAAATTGTTATAGGGTGAGTAAAGATAATTCGTTGGCCGTCAAAACTCCTACACCTAAACAAAAAGATGTCAGACAACGGCCGTCGCAGTATCCTGGAGGTTTGATGTCCTCAGGGGAAACGGTGGAAGATGTGGCAAAAGCTGCTGCCTATAAAGTTGCCGATGCGGAGAACAAATCATTTTTAGCTGCCGAAGCTGTCAAGGAGGCAGAGAGAATTGCCAAGATGGCTGAAGATACAGATTCAATGCTACAAGTGATCAAAGAGATTTATGATCAATATATGGCAGGTGCGGCTCCCGAAGGATCTCAGTTTGACGCCCGTCAGTATGACTCGAAAATGAGTGAGCTGCTTTCAGCTGATGGACAAGATTTTTTCACCTCTTATGATGAAGTTTATGACAGTTTTGATTCTATGGGCTTGCAAGAAAACCTTCTAAGGGGCATCTATGCTTATGGTTTTGAGAAGCCTTCTGCTATTCAGCAGAGAGGAATTGTTCCTTTCTGTAAAGGGCTTGATGTGATTCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACCTTTTGCTCTGGTATTTTGCAGCAACTTGATTATGGTAATGTACAGTGCCAGGCTCTGGTCTTGGCACCCACTAGGGAACTTGCACAACAAATTGAGAAGGTTATGCGTGCACTTGGTGATTATCTTGGTGTTAAGGTCCACGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGACCAACGCATCCTTCAAGCCGGTGTTCACGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTCGACAGTCACTTCGTCCTGATTATATTAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCACGGGGATTCAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGTGTTTTCTCTGCTACAATGCCACCTGAAGCCCTTGAAATCACTAGGAAGTTCATGAACAAACCTGTAAGAATTCTTGTGAAGCGTGATGAGCTAACCTTGGAAGGTATCAAGCAATTTTATGTCAATGTTGACAAGGAAGACTGGAAGCTTGAGACACTCTGTGATCTCTATGAGACTTTGGCTATCACCCAGAGTGTTATCTTTGTCAATACTCGACGCAAAGTCGATTGGCTTACTGATAACATGCGAAACCGTGATCATACAGTATCTGCTACCCATGGTGACATGGATCAGAACACTCGGGATATTATCATGCGGGAGTTCCGATCCGGATCTTCAAGAGTTCTCATCACCACCGATCTGTTAGCTCGTGGTATTGATGTCCAGCAGGTTTCTCTTGTTATAAACTATGATCTGCCAACACAACCGGAAAATTACCTACATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCAATCAACTTCGTAACTACCGAGGATGAAAGAATGTTATTCGACATTCAGAAGTTTTATAACGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCCGATCTCCTGTGA 2052 43.52 MGNQKQKWTSEEEEALLAGVGKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTATQGSKEKSRAAPKSKAIVVASVSNNQNSTPASVQNNTPANTAGDDPSSTTHDVKNAPRYNAMIFEALSTIKDSDGCEIGAIVNFIEQRHEVPQNFRRLLSSRLRRLVSQGKLEKVQNCYRVSKDNSLAVKTPTPKQKDVRQRPSQYPGGLMSSGETVEDVAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQVIKEIYDQYMAGAAPEGSQFDARQYDSKMSELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGNVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDNMRNRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1173756 1184843 + evm.model.ptg000003l.1699 HCH6g0093 545587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0093 683 Gene3D - 113 200 IPR036388 -
HCH6g0093 683 FunFam Telomere repeat-binding factor 1 8 88 - -
HCH6g0093 683 MobiDBLite consensus disorder prediction 84 115 - -
HCH6g0093 683 SMART sant 4 59 IPR001005 -
HCH6g0093 683 Pfam DEAD/DEAH box helicase 335 497 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
HCH6g0093 683 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 310 338 IPR014014 GO:0003724(InterPro)
HCH6g0093 683 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
HCH6g0093 683 SMART helicmild6 563 644 IPR001650 -
HCH6g0093 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 664 IPR027417 -
HCH6g0093 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
HCH6g0093 683 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 683 IPR001650 -
HCH6g0093 683 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 341 511 IPR014001 -
HCH6g0093 683 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
HCH6g0093 683 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
HCH6g0093 683 MobiDBLite consensus disorder prediction 187 214 - -
HCH6g0093 683 Gene3D - 300 518 IPR027417 -
HCH6g0093 683 Gene3D - 519 683 IPR027417 -
HCH6g0093 683 CDD SF2_C_DEAD 523 653 - -
HCH6g0093 683 SMART h15plus2 114 179 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH6g0093 683 MobiDBLite consensus disorder prediction 1 26 - -
HCH6g0093 683 Pfam linker histone H1 and H5 family 118 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH6g0093 683 SMART ultradead3 329 526 IPR014001 -
HCH6g0093 683 FunFam Eukaryotic initiation factor 4A-III 518 683 - -
HCH6g0093 683 Gene3D - 8 87 - -
HCH6g0093 683 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
HCH6g0093 683 FunFam Eukaryotic initiation factor 4A-II 298 517 - -
HCH6g0093 683 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 457 465 IPR000629 -
HCH6g0093 683 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 304 669 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
HCH6g0093 683 CDD SANT_TRF 6 56 - -
HCH6g0093 683 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
HCH6g0093 683 FunFam Telomere repeat-binding factor 1 2 58 - -
HCH6g0093 683 CDD DEADc_EIF4A 315 512 - -
HCH6g0093 683 Pfam Helicase conserved C-terminal domain 536 644 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1224 HCH-Chr3:45468353 HCH6g0093 HCH-Chr6:1173756 5.10E-06 dispersed
HCH6g0093 HCH-Chr6:1173756 HCH6g0399 HCH-Chr6:7813549 6.50E-142 dispersed
HCH11g0919 HCH-Chr11:40415998 HCH6g0093 HCH-Chr6:1173756 1.90E-29 transposed
HCH14g0372 HCH-Chr14:32674738 HCH6g0093 HCH-Chr6:1173756 6.50E-33 transposed
HCH7g1614 HCH-Chr7:48363434 HCH6g0093 HCH-Chr6:1173756 4.20E-74 transposed
HCH4g0524 HCH-Chr4:3434713 HCH6g0093 HCH-Chr6:1173756 4.20E-227 wgd
HCH4g1493 HCH-Chr4:11299365 HCH6g0093 HCH-Chr6:1173756 7.00E-232 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33670 PF00270 DEAD 7.10E-40 CL0023 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0093 K03257 - csv:101223055 807.749