Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0093 | ATGGGAAACCAAAAGCAGAAGTGGACATCGGAGGAAGAAGAAGCTCTCCTCGCCGGAGTAGGAAAACACGGTCCCGGAAAATGGAAAAACATTCTCAAAGATCCCGAATTCGCTCCCTTTCTTACTCACCGTTCCAACATTGATCTTAAGGACAAATGGCGAAATTTGAGCGTCAGTACTGCTACACAAGGCTCAAAAGAGAAGTCTAGGGCGGCCCCTAAATCAAAAGCTATTGTTGTTGCTTCAGTTTCTAACAACCAAAATTCAACTCCTGCTTCAGTTCAAAATAACACACCTGCTAATACTGCAGGGGATGATCCATCAAGTACCACACATGATGTGAAAAATGCTCCAAGGTACAATGCAATGATTTTCGAAGCCCTTTCGACCATAAAAGATTCAGATGGATGTGAAATAGGTGCAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGTTGTTAAGCTCAAGGTTGAGAAGACTCGTTTCACAAGGAAAGCTTGAAAAGGTTCAAAATTGTTATAGGGTGAGTAAAGATAATTCGTTGGCCGTCAAAACTCCTACACCTAAACAAAAAGATGTCAGACAACGGCCGTCGCAGTATCCTGGAGGTTTGATGTCCTCAGGGGAAACGGTGGAAGATGTGGCAAAAGCTGCTGCCTATAAAGTTGCCGATGCGGAGAACAAATCATTTTTAGCTGCCGAAGCTGTCAAGGAGGCAGAGAGAATTGCCAAGATGGCTGAAGATACAGATTCAATGCTACAAGTGATCAAAGAGATTTATGATCAATATATGGCAGGTGCGGCTCCCGAAGGATCTCAGTTTGACGCCCGTCAGTATGACTCGAAAATGAGTGAGCTGCTTTCAGCTGATGGACAAGATTTTTTCACCTCTTATGATGAAGTTTATGACAGTTTTGATTCTATGGGCTTGCAAGAAAACCTTCTAAGGGGCATCTATGCTTATGGTTTTGAGAAGCCTTCTGCTATTCAGCAGAGAGGAATTGTTCCTTTCTGTAAAGGGCTTGATGTGATTCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACCTTTTGCTCTGGTATTTTGCAGCAACTTGATTATGGTAATGTACAGTGCCAGGCTCTGGTCTTGGCACCCACTAGGGAACTTGCACAACAAATTGAGAAGGTTATGCGTGCACTTGGTGATTATCTTGGTGTTAAGGTCCACGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGACCAACGCATCCTTCAAGCCGGTGTTCACGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTCGACAGTCACTTCGTCCTGATTATATTAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCACGGGGATTCAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGTGTTTTCTCTGCTACAATGCCACCTGAAGCCCTTGAAATCACTAGGAAGTTCATGAACAAACCTGTAAGAATTCTTGTGAAGCGTGATGAGCTAACCTTGGAAGGTATCAAGCAATTTTATGTCAATGTTGACAAGGAAGACTGGAAGCTTGAGACACTCTGTGATCTCTATGAGACTTTGGCTATCACCCAGAGTGTTATCTTTGTCAATACTCGACGCAAAGTCGATTGGCTTACTGATAACATGCGAAACCGTGATCATACAGTATCTGCTACCCATGGTGACATGGATCAGAACACTCGGGATATTATCATGCGGGAGTTCCGATCCGGATCTTCAAGAGTTCTCATCACCACCGATCTGTTAGCTCGTGGTATTGATGTCCAGCAGGTTTCTCTTGTTATAAACTATGATCTGCCAACACAACCGGAAAATTACCTACATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCAATCAACTTCGTAACTACCGAGGATGAAAGAATGTTATTCGACATTCAGAAGTTTTATAACGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCCGATCTCCTGTGA | 2052 | 43.52 | MGNQKQKWTSEEEEALLAGVGKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTATQGSKEKSRAAPKSKAIVVASVSNNQNSTPASVQNNTPANTAGDDPSSTTHDVKNAPRYNAMIFEALSTIKDSDGCEIGAIVNFIEQRHEVPQNFRRLLSSRLRRLVSQGKLEKVQNCYRVSKDNSLAVKTPTPKQKDVRQRPSQYPGGLMSSGETVEDVAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQVIKEIYDQYMAGAAPEGSQFDARQYDSKMSELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGNVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDNMRNRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL | 683 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1173756 | 1184843 | + | evm.model.ptg000003l.1699 | HCH6g0093 | 545587 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0093 | 683 | Gene3D | - | 113 | 200 | IPR036388 | - | |
HCH6g0093 | 683 | FunFam | Telomere repeat-binding factor 1 | 8 | 88 | - | - | |
HCH6g0093 | 683 | MobiDBLite | consensus disorder prediction | 84 | 115 | - | - | |
HCH6g0093 | 683 | SMART | sant | 4 | 59 | IPR001005 | - | |
HCH6g0093 | 683 | Pfam | DEAD/DEAH box helicase | 335 | 497 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
HCH6g0093 | 683 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 310 | 338 | IPR014014 | GO:0003724(InterPro) | |
HCH6g0093 | 683 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
HCH6g0093 | 683 | SMART | helicmild6 | 563 | 644 | IPR001650 | - | |
HCH6g0093 | 683 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 379 | 664 | IPR027417 | - | |
HCH6g0093 | 683 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
HCH6g0093 | 683 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 522 | 683 | IPR001650 | - | |
HCH6g0093 | 683 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 341 | 511 | IPR014001 | - | |
HCH6g0093 | 683 | ProSiteProfiles | Myb-like domain profile. | 1 | 57 | IPR001005 | - | |
HCH6g0093 | 683 | SUPERFAMILY | Homeodomain-like | 2 | 59 | IPR009057 | - | |
HCH6g0093 | 683 | MobiDBLite | consensus disorder prediction | 187 | 214 | - | - | |
HCH6g0093 | 683 | Gene3D | - | 300 | 518 | IPR027417 | - | |
HCH6g0093 | 683 | Gene3D | - | 519 | 683 | IPR027417 | - | |
HCH6g0093 | 683 | CDD | SF2_C_DEAD | 523 | 653 | - | - | |
HCH6g0093 | 683 | SMART | h15plus2 | 114 | 179 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
HCH6g0093 | 683 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
HCH6g0093 | 683 | Pfam | linker histone H1 and H5 family | 118 | 177 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
HCH6g0093 | 683 | SMART | ultradead3 | 329 | 526 | IPR014001 | - | |
HCH6g0093 | 683 | FunFam | Eukaryotic initiation factor 4A-III | 518 | 683 | - | - | |
HCH6g0093 | 683 | Gene3D | - | 8 | 87 | - | - | |
HCH6g0093 | 683 | SUPERFAMILY | Winged helix DNA-binding domain | 116 | 195 | IPR036390 | - | |
HCH6g0093 | 683 | FunFam | Eukaryotic initiation factor 4A-II | 298 | 517 | - | - | |
HCH6g0093 | 683 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 457 | 465 | IPR000629 | - | |
HCH6g0093 | 683 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 304 | 669 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
HCH6g0093 | 683 | CDD | SANT_TRF | 6 | 56 | - | - | |
HCH6g0093 | 683 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 116 | 184 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
HCH6g0093 | 683 | FunFam | Telomere repeat-binding factor 1 | 2 | 58 | - | - | |
HCH6g0093 | 683 | CDD | DEADc_EIF4A | 315 | 512 | - | - | |
HCH6g0093 | 683 | Pfam | Helicase conserved C-terminal domain | 536 | 644 | IPR001650 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g1224 | HCH-Chr3:45468353 | HCH6g0093 | HCH-Chr6:1173756 | 5.10E-06 | dispersed | |
HCH6g0093 | HCH-Chr6:1173756 | HCH6g0399 | HCH-Chr6:7813549 | 6.50E-142 | dispersed | |
HCH11g0919 | HCH-Chr11:40415998 | HCH6g0093 | HCH-Chr6:1173756 | 1.90E-29 | transposed | |
HCH14g0372 | HCH-Chr14:32674738 | HCH6g0093 | HCH-Chr6:1173756 | 6.50E-33 | transposed | |
HCH7g1614 | HCH-Chr7:48363434 | HCH6g0093 | HCH-Chr6:1173756 | 4.20E-74 | transposed | |
HCH4g0524 | HCH-Chr4:3434713 | HCH6g0093 | HCH-Chr6:1173756 | 4.20E-227 | wgd | |
HCH4g1493 | HCH-Chr4:11299365 | HCH6g0093 | HCH-Chr6:1173756 | 7.00E-232 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33670 | PF00270 | DEAD | 7.10E-40 | CL0023 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0093 | K03257 | - | csv:101223055 | 807.749 |