Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g0106 | ATGGTGATAAAAAGTTTGTTATTCCAACAACAACAACACCAGCAACAAGCTATGGAGGAAAACTTATCCAATTTGACTTCAGCATCTGGTGAAGCAAGTGTTTGTTCCGGCAATAGAACCGATCAGAATATCGCTGCCGACTATAATTCAGGCGGTCGACAATACTTTTCCTCCACCCCACCAACTCAAAACCAACCTCCAAAAAAGAAGAGAAATCTTCCCGGAAACCCAGACCCAGATGCAGAAGTGGTAGCTTTATCTCCCAAATCTCTGCTAGCAACAAATAGATTCATATGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCACAATCTGCCATGGAAGTTGAAGCAAAGACCAAAAAATGAGGTTATAAGGAGAAAGGTTTATGTTTGTCCAGAAGAGAGCTGTGTGCATCATGATCCATCAAGAGCCCTTGGAGACTTGACTGGAATTAAGAAGCATTTTTCTAGAAAACATGGAGAGAAGAAATGGAAATGTGATAAGTGCTCAAAGAGGTATGCTGTTCAATCAGATTGGAAAGCACATTCCAAGACCTGTGGCACCAAAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGAGATAGTTTTATCACCCACAGAGCTTTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAGCCATTACTTCAAATCCAATTCCATTACTCTCAACAACTCCTTCATCTTCTTCAATCTCTCACTTAAATTTCCAATCCCACTTCAATAATCCCCTAGATATCCATTCTTCACCATTATTTTCCCTTAAAAAAGAGCATCAAAACTTCACTCCTACTAATTTAATCAGACCAGAAATCCCACCCTGGCTTGCCCCACATCCCATTGACATCTCTTCTTCTTCTTCCTCCATCTTCCCCACCAGATTACACCAAGATTTCACTCCCCCCCCGCTACCGCCACCGCATGCGTCGGCCGATAATCAAACCCTAAACAATGTCTCAAACCCTAATCTTGGCCCCACCCTCCTTCCACCTTCTTATCATTCAACTCCTTCTTCACACATGTCGGCCACGGCGTTGCTGCAGAAGGCGGCTCAGATGGGTTCGACGATGAGCGGTAATACTGTTACTGATCGTTTATCGTCGCAAGTGGCAGCGTCGGGGGCGACAATGGTGAGGTCCCATAATCAGGATCACGTGTCGGATTCTGCCAGCAATACAAGCTGTAATTTTGGCCTTAAACTGTCGTCAACACGTGAAGATCATCATCATATCGGTGCTGTAGGCTTCCACCATGGATTGACGACGTCAGCAACGACAATGGCGACCGCGTCAGGCGTTCCTTCTTCAGTACACGACTTGATGAATTCTTTCTCAACCGTTTCTGGGTTTGAAGGATCTTCTTTCGAGGACGCGTTTGGCGGAGCTGCCGGCATGGAAGCTACTGCTGGCGGCGGCAGAGGTGGTGGTGGCCGTAATGCTGGAAGTGAAGGTTTGACGAGAGATTTCTTGGGGCTCAGAGCTTTTTCTCATGGCGATTTTCTCGATATCGCTGGTTTTAGTAACTGCATGAACGCTGCTCCTCAGAGTAATCAAAATCAAATTCAAAAACCATGGCAAGGTTAG | 1638 | 45.24 | MVIKSLLFQQQQHQQQAMEENLSNLTSASGEASVCSGNRTDQNIAADYNSGGRQYFSSTPPTQNQPPKKKRNLPGNPDPDAEVVALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRPKNEVIRRKVYVCPEESCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSNPIPLLSTTPSSSSISHLNFQSHFNNPLDIHSSPLFSLKKEHQNFTPTNLIRPEIPPWLAPHPIDISSSSSSIFPTRLHQDFTPPPLPPPHASADNQTLNNVSNPNLGPTLLPPSYHSTPSSHMSATALLQKAAQMGSTMSGNTVTDRLSSQVAASGATMVRSHNQDHVSDSASNTSCNFGLKLSSTREDHHHIGAVGFHHGLTTSATTMATASGVPSSVHDLMNSFSTVSGFEGSSFEDAFGGAAGMEATAGGGRGGGGRNAGSEGLTRDFLGLRAFSHGDFLDIAGFSNCMNAAPQSNQNQIQKPWQG | 545 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1325702 | 1328725 | + | evm.model.ptg000003l.1686 | HCH6g0106 | 545600 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g0106 | 545 | FunFam | protein indeterminate-domain 12-like | 76 | 145 | - | - | |
| HCH6g0106 | 545 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 57 | 525 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| HCH6g0106 | 545 | Gene3D | Classic Zinc Finger | 152 | 232 | - | - | |
| HCH6g0106 | 545 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 135 | 169 | - | - | |
| HCH6g0106 | 545 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 152 | 231 | - | - | |
| HCH6g0106 | 545 | MobiDBLite | consensus disorder prediction | 48 | 79 | - | - | |
| HCH6g0106 | 545 | Pfam | Zinc finger, C2H2 type | 97 | 119 | IPR013087 | - | |
| HCH6g0106 | 545 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 119 | IPR013087 | - | |
| HCH6g0106 | 545 | SUPERFAMILY | beta-beta-alpha zinc fingers | 96 | 194 | IPR036236 | - | |
| HCH6g0106 | 545 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| HCH6g0106 | 545 | SMART | c2h2final6 | 174 | 194 | IPR013087 | - | |
| HCH6g0106 | 545 | SMART | c2h2final6 | 139 | 169 | IPR013087 | - | |
| HCH6g0106 | 545 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 200 | 236 | - | - | |
| HCH6g0106 | 545 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| HCH6g0106 | 545 | MobiDBLite | consensus disorder prediction | 48 | 70 | - | - | |
| HCH6g0106 | 545 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 173 | 197 | - | - | |
| HCH6g0106 | 545 | Coils | Coil | 8 | 28 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH14g0555 | HCH-Chr14:34492430 | HCH6g0106 | HCH-Chr6:1325702 | 2.20E-89 | dispersed | |
| HCH3g0229 | HCH-Chr3:1474563 | HCH6g0106 | HCH-Chr6:1325702 | 2.80E-60 | dispersed | |
| HCH3g1260 | HCH-Chr3:47541140 | HCH6g0106 | HCH-Chr6:1325702 | 2.20E-88 | dispersed | |
| HCH6g0106 | HCH-Chr6:1325702 | HCH9g0599 | HCH-Chr9:4017327 | 2.80E-87 | dispersed | |
| HCH10g1389 | HCH-Chr10:46466717 | HCH6g0106 | HCH-Chr6:1325702 | 6.80E-62 | transposed | |
| HCH7g0854 | HCH-Chr7:23632664 | HCH6g0106 | HCH-Chr6:1325702 | 8.80E-88 | transposed | |
| HCH11g0273 | HCH-Chr11:2485642 | HCH6g0106 | HCH-Chr6:1325702 | 7.70E-92 | wgd | |
| HCH12g0500 | HCH-Chr12:2934064 | HCH6g0106 | HCH-Chr6:1325702 | 2.60E-89 | wgd | |
| HCH4g1486 | HCH-Chr4:11238449 | HCH6g0106 | HCH-Chr6:1325702 | 1.10E-137 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33672 | PF12171 | zf-C2H2_jaz | 8.10E-05 | CL0361 | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH6g0106 | K25870 | - | vvi:109123222 | 537.339 |