Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0106 ATGGTGATAAAAAGTTTGTTATTCCAACAACAACAACACCAGCAACAAGCTATGGAGGAAAACTTATCCAATTTGACTTCAGCATCTGGTGAAGCAAGTGTTTGTTCCGGCAATAGAACCGATCAGAATATCGCTGCCGACTATAATTCAGGCGGTCGACAATACTTTTCCTCCACCCCACCAACTCAAAACCAACCTCCAAAAAAGAAGAGAAATCTTCCCGGAAACCCAGACCCAGATGCAGAAGTGGTAGCTTTATCTCCCAAATCTCTGCTAGCAACAAATAGATTCATATGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCACAATCTGCCATGGAAGTTGAAGCAAAGACCAAAAAATGAGGTTATAAGGAGAAAGGTTTATGTTTGTCCAGAAGAGAGCTGTGTGCATCATGATCCATCAAGAGCCCTTGGAGACTTGACTGGAATTAAGAAGCATTTTTCTAGAAAACATGGAGAGAAGAAATGGAAATGTGATAAGTGCTCAAAGAGGTATGCTGTTCAATCAGATTGGAAAGCACATTCCAAGACCTGTGGCACCAAAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGAGATAGTTTTATCACCCACAGAGCTTTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAGCCATTACTTCAAATCCAATTCCATTACTCTCAACAACTCCTTCATCTTCTTCAATCTCTCACTTAAATTTCCAATCCCACTTCAATAATCCCCTAGATATCCATTCTTCACCATTATTTTCCCTTAAAAAAGAGCATCAAAACTTCACTCCTACTAATTTAATCAGACCAGAAATCCCACCCTGGCTTGCCCCACATCCCATTGACATCTCTTCTTCTTCTTCCTCCATCTTCCCCACCAGATTACACCAAGATTTCACTCCCCCCCCGCTACCGCCACCGCATGCGTCGGCCGATAATCAAACCCTAAACAATGTCTCAAACCCTAATCTTGGCCCCACCCTCCTTCCACCTTCTTATCATTCAACTCCTTCTTCACACATGTCGGCCACGGCGTTGCTGCAGAAGGCGGCTCAGATGGGTTCGACGATGAGCGGTAATACTGTTACTGATCGTTTATCGTCGCAAGTGGCAGCGTCGGGGGCGACAATGGTGAGGTCCCATAATCAGGATCACGTGTCGGATTCTGCCAGCAATACAAGCTGTAATTTTGGCCTTAAACTGTCGTCAACACGTGAAGATCATCATCATATCGGTGCTGTAGGCTTCCACCATGGATTGACGACGTCAGCAACGACAATGGCGACCGCGTCAGGCGTTCCTTCTTCAGTACACGACTTGATGAATTCTTTCTCAACCGTTTCTGGGTTTGAAGGATCTTCTTTCGAGGACGCGTTTGGCGGAGCTGCCGGCATGGAAGCTACTGCTGGCGGCGGCAGAGGTGGTGGTGGCCGTAATGCTGGAAGTGAAGGTTTGACGAGAGATTTCTTGGGGCTCAGAGCTTTTTCTCATGGCGATTTTCTCGATATCGCTGGTTTTAGTAACTGCATGAACGCTGCTCCTCAGAGTAATCAAAATCAAATTCAAAAACCATGGCAAGGTTAG 1638 45.24 MVIKSLLFQQQQHQQQAMEENLSNLTSASGEASVCSGNRTDQNIAADYNSGGRQYFSSTPPTQNQPPKKKRNLPGNPDPDAEVVALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRPKNEVIRRKVYVCPEESCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSNPIPLLSTTPSSSSISHLNFQSHFNNPLDIHSSPLFSLKKEHQNFTPTNLIRPEIPPWLAPHPIDISSSSSSIFPTRLHQDFTPPPLPPPHASADNQTLNNVSNPNLGPTLLPPSYHSTPSSHMSATALLQKAAQMGSTMSGNTVTDRLSSQVAASGATMVRSHNQDHVSDSASNTSCNFGLKLSSTREDHHHIGAVGFHHGLTTSATTMATASGVPSSVHDLMNSFSTVSGFEGSSFEDAFGGAAGMEATAGGGRGGGGRNAGSEGLTRDFLGLRAFSHGDFLDIAGFSNCMNAAPQSNQNQIQKPWQG 545
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 1325702 1328725 + evm.model.ptg000003l.1686 HCH6g0106 545600
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0106 545 FunFam protein indeterminate-domain 12-like 76 145 - -
HCH6g0106 545 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 57 525 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH6g0106 545 Gene3D Classic Zinc Finger 152 232 - -
HCH6g0106 545 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 135 169 - -
HCH6g0106 545 FunFam protein indeterminate-domain 5, chloroplastic-like 152 231 - -
HCH6g0106 545 MobiDBLite consensus disorder prediction 48 79 - -
HCH6g0106 545 Pfam Zinc finger, C2H2 type 97 119 IPR013087 -
HCH6g0106 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
HCH6g0106 545 SUPERFAMILY beta-beta-alpha zinc fingers 96 194 IPR036236 -
HCH6g0106 545 SMART c2h2final6 97 119 IPR013087 -
HCH6g0106 545 SMART c2h2final6 174 194 IPR013087 -
HCH6g0106 545 SMART c2h2final6 139 169 IPR013087 -
HCH6g0106 545 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 200 236 - -
HCH6g0106 545 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
HCH6g0106 545 MobiDBLite consensus disorder prediction 48 70 - -
HCH6g0106 545 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 173 197 - -
HCH6g0106 545 Coils Coil 8 28 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0555 HCH-Chr14:34492430 HCH6g0106 HCH-Chr6:1325702 2.20E-89 dispersed
HCH3g0229 HCH-Chr3:1474563 HCH6g0106 HCH-Chr6:1325702 2.80E-60 dispersed
HCH3g1260 HCH-Chr3:47541140 HCH6g0106 HCH-Chr6:1325702 2.20E-88 dispersed
HCH6g0106 HCH-Chr6:1325702 HCH9g0599 HCH-Chr9:4017327 2.80E-87 dispersed
HCH10g1389 HCH-Chr10:46466717 HCH6g0106 HCH-Chr6:1325702 6.80E-62 transposed
HCH7g0854 HCH-Chr7:23632664 HCH6g0106 HCH-Chr6:1325702 8.80E-88 transposed
HCH11g0273 HCH-Chr11:2485642 HCH6g0106 HCH-Chr6:1325702 7.70E-92 wgd
HCH12g0500 HCH-Chr12:2934064 HCH6g0106 HCH-Chr6:1325702 2.60E-89 wgd
HCH4g1486 HCH-Chr4:11238449 HCH6g0106 HCH-Chr6:1325702 1.10E-137 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33672 PF12171 zf-C2H2_jaz 8.10E-05 CL0361 HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0106 K25870 - vvi:109123222 537.339