Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0115 ATGGCAATGGAGGGAAAGCAAAAGTTCTTCCATGGAACTCTTGAAGTTACTATCTTCCATGCAACAGCATTCACTCCACCATCACCTCTCAATTGCATATTCGCGGGAGGAAAGCGCAGCTACGTGACCGTCAAGATAGATGGTAAAGAGGTTGCCGAGACGAGCCACGAACACGACCGTGTTTGGAACCAAACCTTCAAAGTTCTTTGTGCTCATTCACTGACTTCTAGAGTCACTATTACAATGAAAACAACTCGTTCTGTCTTGGGTAGATTCCACATCCAAGCCCAACAGATCTTAAAAGAAGCAAGTTTCATCAATGGTTTCTTCCCCCTAACTATGGAAAATGGAAAGCCTAGTCCAGAGCTCCGGCTTCGATTCATGATATGGTTTAAACCAGCAGTATATGAACTAAGCTGGAAAAAAATACTGCGAAACGGAGAGTACAAGGGGCTAAGGAATGCAACATTTCCTTTAAGGTCCAACTGTCATGTGACTCTATATCAGGATGCACACCATCTCCCGACTTTTCGACTTCCGTTTTACGGTTCCACCGCACCAAGAAAGCTATGGGAAGATATATACAAAGCCATAGATGGTGCAAAGCACTTGATATACATTGCAGGATGGTCCTTTAATCCAAAGATGGTGCTGGTAAGAGACTCTCATACTGATATTCCCTATGCTTTGGGAGTAAAGCTTGGTGAATTGTTGAAGCAAAAGGCAGAGGAAGGTGTAGCTGTGAGAATATTGATTTGGGATGATGAAACATCTCTTCCCATCATCAAGAATGCTGGCATAATGAAAACTCATGATGAAGATGCCCGAGCGTATTTCTCGCACTCGAAAGTTATATGCAGATTGTGCCCCAAATTACACCCTATGTCCCCACCAATTTTCTCCCACCATCAGAAAACCATAACTGTAGATGCTCAAACACATATTAATGCAAGAAACAGGGAAATTATGAGTTTCATTGGAGGTTTAGATCTTTGTGACGGTCGCTACGATACCGAACAACATTCATTGTTCCACACATTGAATATGGAATCCCATTCATGTGATTTCTATCAGACGAGTATATCGGGTGCGAAGCTTCAGAAAGGAGGGCCAAGAGAGCCATGGCATGATGTCCATGCTTGCGTAGTTGGTGAAGCAGCTTGGGATATATTGACAAACTTTGAGCAACGGTGGACTAAGCAATCAGATGCTTCATTCTTAGTCCCTACAAGCATCTTGATAAACCTCATGCCCCATCCAGAATCAAACATGAACCAACAAAAGGATTGGAACGTGCAAGTTTTTCGGTCTATCGACCACTTGTCTGCCAGCCAAGCTTTCAGAAACATGACAGTTGAACGAACGATCCATGAAGCTTATGTCGAAGCAATAAGGCGAGCTGAAAGATTTATCTACATTGAAAACCAATACTTCATTGGGGGGTGCCACTTGTGGGACAAAGATCAGAATTGCGGATGCACGAATTTGATACCGATCGAGATTGCACTCAAGGTAGCTAATAAGATCAAGGCAAGGGAGAGATTTGCAGTTTATATAGTGATACCGATGTGGCCAGAAGGAGCACCGGAGAGTGACTCGGTTGAGGATATGCTACACTGGACTAGGCAAACAATGACAATGATGTATAGATTGATCGGAGAAGCAATACAAGACTCTGGAGAGAAGGGCCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAATAGAGAAGAAAAGGGAAAATGGGAATTCATTCCTCCACACAAACCTCAACCCACAACACAGTATTGGAATGCCCAACAACATAGAAGATTCATGGTCTATGTCCATTCCAAGGTCATGATAGTGGATGACATGTACATTCTAATCGGTTCCGCAAACGTAAACCAGAGATCGATGGACGGGCAACGAGATACGGAGATCGCAATCGGATGCTACCAAGTGAAACATGAAGGAAAAGACATATCAGATGAAAGAGACATATCTAAATTCAGATTGTCTCTATGGTTTGAACACATGGGATCATTCCAAGAATTATTCTTGAATCCCGAAAGCTCGGAATGTGTTCAAAGAATTCGATCGATAGGCGATCAAGCATGGAAAACATATAGTGGTGAAGAAGTTGCAGATATGAAAGGAATTCACCTTGTAACATATCCAGTGAAGGTGACTGAGAATGGCACCATTGAGGATATAGAAGAAAATGGAGGCCATTTTCCTGATACAAAATCCCCCATTAAAGGAAGAAGATCAATGATCTTACCACCCATTTTCACAACTTAG 2286 42.56 MAMEGKQKFFHGTLEVTIFHATAFTPPSPLNCIFAGGKRSYVTVKIDGKEVAETSHEHDRVWNQTFKVLCAHSLTSRVTITMKTTRSVLGRFHIQAQQILKEASFINGFFPLTMENGKPSPELRLRFMIWFKPAVYELSWKKILRNGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFRLPFYGSTAPRKLWEDIYKAIDGAKHLIYIAGWSFNPKMVLVRDSHTDIPYALGVKLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMKTHDEDARAYFSHSKVICRLCPKLHPMSPPIFSHHQKTITVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNMESHSCDFYQTSISGAKLQKGGPREPWHDVHACVVGEAAWDILTNFEQRWTKQSDASFLVPTSILINLMPHPESNMNQQKDWNVQVFRSIDHLSASQAFRNMTVERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQNCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGAPESDSVEDMLHWTRQTMTMMYRLIGEAIQDSGEKGHPRDYLNFFCLANREEKGKWEFIPPHKPQPTTQYWNAQQHRRFMVYVHSKVMIVDDMYILIGSANVNQRSMDGQRDTEIAIGCYQVKHEGKDISDERDISKFRLSLWFEHMGSFQELFLNPESSECVQRIRSIGDQAWKTYSGEEVADMKGIHLVTYPVKVTENGTIEDIEENGGHFPDTKSPIKGRRSMILPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1450375 1453368 - evm.model.ptg000003l.1677 HCH6g0115 545609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0115 761 Gene3D Endonuclease Chain A 448 652 - -
HCH6g0115 761 Gene3D Endonuclease Chain A 180 428 - -
HCH6g0115 761 PANTHER PHOSPHOLIPASE D 38 746 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
HCH6g0115 761 SUPERFAMILY Phospholipase D/nuclease 146 408 - -
HCH6g0115 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
HCH6g0115 761 Gene3D C2 domain 2 130 IPR035892 -
HCH6g0115 761 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
HCH6g0115 761 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
HCH6g0115 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824(InterPro)
HCH6g0115 761 Pfam C2 domain 12 108 IPR000008 -
HCH6g0115 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 127 IPR035892 -
HCH6g0115 761 Pfam Phospholipase D C terminal 679 750 IPR024632 -
HCH6g0115 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
HCH6g0115 761 SUPERFAMILY Phospholipase D/nuclease 419 689 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0115 HCH-Chr6:1450375 HCH6g0221 HCH-Chr6:2927551 1.30E-172 dispersed
HCH6g0115 HCH-Chr6:1450375 HCH4g1310 HCH-Chr4:9179378 1.90E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0115 K01115 - csv:101206396 1408.66