Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0115 ATGGCAATGGAGGGAAAGCAAAAGTTCTTCCATGGAACTCTTGAAGTTACTATCTTCCATGCAACAGCATTCACTCCACCATCACCTCTCAATTGCATATTCGCGGGAGGAAAGCGCAGCTACGTGACCGTCAAGATAGATGGTAAAGAGGTTGCCGAGACGAGCCACGAACACGACCGTGTTTGGAACCAAACCTTCAAAGTTCTTTGTGCTCATTCACTGACTTCTAGAGTCACTATTACAATGAAAACAACTCGTTCTGTCTTGGGTAGATTCCACATCCAAGCCCAACAGATCTTAAAAGAAGCAAGTTTCATCAATGGTTTCTTCCCCCTAACTATGGAAAATGGAAAGCCTAGTCCAGAGCTCCGGCTTCGATTCATGATATGGTTTAAACCAGCAGTATATGAACTAAGCTGGAAAAAAATACTGCGAAACGGAGAGTACAAGGGGCTAAGGAATGCAACATTTCCTTTAAGGTCCAACTGTCATGTGACTCTATATCAGGATGCACACCATCTCCCGACTTTTCGACTTCCGTTTTACGGTTCCACCGCACCAAGAAAGCTATGGGAAGATATATACAAAGCCATAGATGGTGCAAAGCACTTGATATACATTGCAGGATGGTCCTTTAATCCAAAGATGGTGCTGGTAAGAGACTCTCATACTGATATTCCCTATGCTTTGGGAGTAAAGCTTGGTGAATTGTTGAAGCAAAAGGCAGAGGAAGGTGTAGCTGTGAGAATATTGATTTGGGATGATGAAACATCTCTTCCCATCATCAAGAATGCTGGCATAATGAAAACTCATGATGAAGATGCCCGAGCGTATTTCTCGCACTCGAAAGTTATATGCAGATTGTGCCCCAAATTACACCCTATGTCCCCACCAATTTTCTCCCACCATCAGAAAACCATAACTGTAGATGCTCAAACACATATTAATGCAAGAAACAGGGAAATTATGAGTTTCATTGGAGGTTTAGATCTTTGTGACGGTCGCTACGATACCGAACAACATTCATTGTTCCACACATTGAATATGGAATCCCATTCATGTGATTTCTATCAGACGAGTATATCGGGTGCGAAGCTTCAGAAAGGAGGGCCAAGAGAGCCATGGCATGATGTCCATGCTTGCGTAGTTGGTGAAGCAGCTTGGGATATATTGACAAACTTTGAGCAACGGTGGACTAAGCAATCAGATGCTTCATTCTTAGTCCCTACAAGCATCTTGATAAACCTCATGCCCCATCCAGAATCAAACATGAACCAACAAAAGGATTGGAACGTGCAAGTTTTTCGGTCTATCGACCACTTGTCTGCCAGCCAAGCTTTCAGAAACATGACAGTTGAACGAACGATCCATGAAGCTTATGTCGAAGCAATAAGGCGAGCTGAAAGATTTATCTACATTGAAAACCAATACTTCATTGGGGGGTGCCACTTGTGGGACAAAGATCAGAATTGCGGATGCACGAATTTGATACCGATCGAGATTGCACTCAAGGTAGCTAATAAGATCAAGGCAAGGGAGAGATTTGCAGTTTATATAGTGATACCGATGTGGCCAGAAGGAGCACCGGAGAGTGACTCGGTTGAGGATATGCTACACTGGACTAGGCAAACAATGACAATGATGTATAGATTGATCGGAGAAGCAATACAAGACTCTGGAGAGAAGGGCCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAATAGAGAAGAAAAGGGAAAATGGGAATTCATTCCTCCACACAAACCTCAACCCACAACACAGTATTGGAATGCCCAACAACATAGAAGATTCATGGTCTATGTCCATTCCAAGGTCATGATAGTGGATGACATGTACATTCTAATCGGTTCCGCAAACGTAAACCAGAGATCGATGGACGGGCAACGAGATACGGAGATCGCAATCGGATGCTACCAAGTGAAACATGAAGGAAAAGACATATCAGATGAAAGAGACATATCTAAATTCAGATTGTCTCTATGGTTTGAACACATGGGATCATTCCAAGAATTATTCTTGAATCCCGAAAGCTCGGAATGTGTTCAAAGAATTCGATCGATAGGCGATCAAGCATGGAAAACATATAGTGGTGAAGAAGTTGCAGATATGAAAGGAATTCACCTTGTAACATATCCAGTGAAGGTGACTGAGAATGGCACCATTGAGGATATAGAAGAAAATGGAGGCCATTTTCCTGATACAAAATCCCCCATTAAAGGAAGAAGATCAATGATCTTACCACCCATTTTCACAACTTAG 2286 42.56 MAMEGKQKFFHGTLEVTIFHATAFTPPSPLNCIFAGGKRSYVTVKIDGKEVAETSHEHDRVWNQTFKVLCAHSLTSRVTITMKTTRSVLGRFHIQAQQILKEASFINGFFPLTMENGKPSPELRLRFMIWFKPAVYELSWKKILRNGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFRLPFYGSTAPRKLWEDIYKAIDGAKHLIYIAGWSFNPKMVLVRDSHTDIPYALGVKLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMKTHDEDARAYFSHSKVICRLCPKLHPMSPPIFSHHQKTITVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNMESHSCDFYQTSISGAKLQKGGPREPWHDVHACVVGEAAWDILTNFEQRWTKQSDASFLVPTSILINLMPHPESNMNQQKDWNVQVFRSIDHLSASQAFRNMTVERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQNCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGAPESDSVEDMLHWTRQTMTMMYRLIGEAIQDSGEKGHPRDYLNFFCLANREEKGKWEFIPPHKPQPTTQYWNAQQHRRFMVYVHSKVMIVDDMYILIGSANVNQRSMDGQRDTEIAIGCYQVKHEGKDISDERDISKFRLSLWFEHMGSFQELFLNPESSECVQRIRSIGDQAWKTYSGEEVADMKGIHLVTYPVKVTENGTIEDIEENGGHFPDTKSPIKGRRSMILPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1450375 1453368 - evm.model.ptg000003l.1677 HCH6g0115 545609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0115 761 Gene3D Endonuclease Chain A 448 652 - -
HCH6g0115 761 Gene3D Endonuclease Chain A 180 428 - -
HCH6g0115 761 PANTHER PHOSPHOLIPASE D 38 746 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
HCH6g0115 761 SUPERFAMILY Phospholipase D/nuclease 146 408 - -
HCH6g0115 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
HCH6g0115 761 Gene3D C2 domain 2 130 IPR035892 -
HCH6g0115 761 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
HCH6g0115 761 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
HCH6g0115 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824(InterPro)
HCH6g0115 761 Pfam C2 domain 12 108 IPR000008 -
HCH6g0115 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 127 IPR035892 -
HCH6g0115 761 Pfam Phospholipase D C terminal 679 750 IPR024632 -
HCH6g0115 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
HCH6g0115 761 SUPERFAMILY Phospholipase D/nuclease 419 689 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0115 K01115 - - csv:101206396 1408.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0115 HCH-Chr6:1450375 HCH6g0221 HCH-Chr6:2927551 1.30E-172 dispersed
HCH6g0115 HCH-Chr6:1450375 HCH4g1310 HCH-Chr4:9179378 1.90E-174 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1310 . 6 808 Phospholipase D Gene Family (Wang group) AT1G52570 82.0 0.0e+00 1410.6
HCH6g0221 . 1 806 Phospholipase D Gene Family (Wang group) AT1G52570 75.6 0.0e+00 1337.8
HCH4g0435 . 4 837 Phospholipase D Gene Family (Wang group) AT1G52570 63.8 0.0e+00 1122.8
HCH6g0115 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 59.2 5.0e-265 910.6
HCH4g1310 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1403.7
HCH6g0221 . 1 806 Phospholipase D Gene Family (Wang group) AT3G15730 76.4 0.0e+00 1356.3
HCH4g0435 . 4 837 Phospholipase D Gene Family (Wang group) AT3G15730 64.0 0.0e+00 1119.0
HCH4g1310 . 73 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.8e-292 1001.1
HCH4g0435 . 79 837 Phospholipase D Gene Family (Wang group) AT5G25370 62.7 1.4e-291 998.8
HCH6g0221 . 71 806 Phospholipase D Gene Family (Wang group) AT5G25370 62.4 1.0e-286 982.6
HCH13g1175 . 116 1091 Phospholipase D Gene Family (Wang group) AT2G42010 71.5 0.0e+00 1439.5
HCH6g0948 . 30 853 Phospholipase D Gene Family (Wang group) AT2G42010 70.6 0.0e+00 1271.1
HCH4g0820 . 3 845 Phospholipase D Gene Family (Wang group) AT2G42010 54.0 2.2e-272 935.6
HCH14g0686 . 8 853 Phospholipase D Gene Family (Wang group) AT2G42010 52.7 4.1e-263 904.8
HCH13g1175 . 324 1091 Phospholipase D Gene Family (Wang group) AT4G00240 79.4 0.0e+00 1265.8
HCH6g0948 . 80 853 Phospholipase D Gene Family (Wang group) AT4G00240 69.7 0.0e+00 1154.0
HCH4g0820 . 61 845 Phospholipase D Gene Family (Wang group) AT4G00240 56.3 6.7e-260 893.6
HCH14g0686 . 68 853 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 1.2e-248 856.3
HCH6g0948 . 12 638 Phospholipase D Gene Family (Wang group) AT4G11830 65.9 4.0e-255 877.5
HCH13g1175 . 250 876 Phospholipase D Gene Family (Wang group) AT4G11830 65.5 5.7e-249 857.1
HCH4g0820 . 4 631 Phospholipase D Gene Family (Wang group) AT4G11830 50.9 8.1e-179 624.0
HCH6g0948 . 7 853 Phospholipase D Gene Family (Wang group) AT4G11840 65.6 0.0e+00 1174.1
HCH13g1175 . 244 1091 Phospholipase D Gene Family (Wang group) AT4G11840 66.1 0.0e+00 1164.4
HCH4g0820 . 4 845 Phospholipase D Gene Family (Wang group) AT4G11840 51.4 2.2e-248 855.5
HCH14g0686 . 10 843 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 4.2e-244 841.3
HCH6g0948 . 5 853 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1235.3
HCH13g1175 . 244 1091 Phospholipase D Gene Family (Wang group) AT4G11850 69.8 0.0e+00 1234.6
HCH4g0820 . 12 845 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 4.2e-255 877.9
HCH14g0686 . 10 853 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 9.6e-252 866.7
HCH14g0686 . 1 690 Phospholipase D Gene Family (Wang group) AT4G35790 69.6 3.9e-296 1013.8
HCH4g0820 . 6 674 Phospholipase D Gene Family (Wang group) AT4G35790 65.4 4.1e-277 950.7
HCH13g1175 . 269 920 Phospholipase D Gene Family (Wang group) AT4G35790 50.4 4.6e-196 681.4
HCH6g1716 . 47 1120 Phospholipase D Gene Family (Wang group) AT3G05630 62.6 0.0e+00 1340.1
HCH10g0893 . 32 1108 Phospholipase D Gene Family (Wang group) AT3G05630 62.7 0.0e+00 1332.8
HCH6g1716 . 2 997 Phospholipase D Gene Family (Wang group) AT3G16785 72.8 0.0e+00 1471.1
HCH10g0893 . 19 984 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1198.7
HCH4g1310 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1403.7
HCH6g0221 . 1 806 Phospholipase D Gene Family (Wang group) AT3G15730 76.4 0.0e+00 1356.3
HCH4g0435 . 4 837 Phospholipase D Gene Family (Wang group) AT3G15730 64.0 0.0e+00 1119.0
HCH4g1310 . 6 808 Phospholipase D Gene Family (Wang group) AT1G52570 82.0 0.0e+00 1410.6
HCH6g0221 . 1 806 Phospholipase D Gene Family (Wang group) AT1G52570 75.6 0.0e+00 1337.8
HCH4g0435 . 4 837 Phospholipase D Gene Family (Wang group) AT1G52570 63.8 0.0e+00 1122.8
HCH13g1175 . 116 1091 Phospholipase D Gene Family (Wang group) AT2G42010 71.5 0.0e+00 1439.5
HCH6g0948 . 30 853 Phospholipase D Gene Family (Wang group) AT2G42010 70.6 0.0e+00 1271.1
HCH4g0820 . 3 845 Phospholipase D Gene Family (Wang group) AT2G42010 54.0 2.2e-272 935.6
HCH14g0686 . 8 853 Phospholipase D Gene Family (Wang group) AT2G42010 52.7 4.1e-263 904.8
HCH13g1175 . 324 1091 Phospholipase D Gene Family (Wang group) AT4G00240 79.4 0.0e+00 1265.8
HCH6g0948 . 80 853 Phospholipase D Gene Family (Wang group) AT4G00240 69.7 0.0e+00 1154.0
HCH4g0820 . 61 845 Phospholipase D Gene Family (Wang group) AT4G00240 56.3 6.7e-260 893.6
HCH14g0686 . 68 853 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 1.2e-248 856.3
HCH6g0948 . 5 853 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1235.3
HCH13g1175 . 244 1091 Phospholipase D Gene Family (Wang group) AT4G11850 69.8 0.0e+00 1234.6
HCH4g0820 . 12 845 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 4.2e-255 877.9
HCH14g0686 . 10 853 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 9.6e-252 866.7
HCH6g0948 . 12 638 Phospholipase D Gene Family (Wang group) AT4G11830 65.9 4.0e-255 877.5
HCH13g1175 . 250 876 Phospholipase D Gene Family (Wang group) AT4G11830 65.5 5.7e-249 857.1
HCH4g0820 . 4 631 Phospholipase D Gene Family (Wang group) AT4G11830 50.9 8.1e-179 624.0
HCH6g0948 . 7 853 Phospholipase D Gene Family (Wang group) AT4G11840 65.6 0.0e+00 1174.1
HCH13g1175 . 244 1091 Phospholipase D Gene Family (Wang group) AT4G11840 66.1 0.0e+00 1164.4
HCH4g0820 . 4 845 Phospholipase D Gene Family (Wang group) AT4G11840 51.4 2.2e-248 855.5
HCH14g0686 . 10 843 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 4.2e-244 841.3
HCH14g0686 . 1 690 Phospholipase D Gene Family (Wang group) AT4G35790 69.6 3.9e-296 1013.8
HCH4g0820 . 6 674 Phospholipase D Gene Family (Wang group) AT4G35790 65.4 4.1e-277 950.7
HCH13g1175 . 269 920 Phospholipase D Gene Family (Wang group) AT4G35790 50.4 4.6e-196 681.4
HCH6g0115 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 59.2 5.0e-265 910.6
HCH4g1310 . 73 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.8e-292 1001.1
HCH4g0435 . 79 837 Phospholipase D Gene Family (Wang group) AT5G25370 62.7 1.4e-291 998.8
HCH6g0221 . 71 806 Phospholipase D Gene Family (Wang group) AT5G25370 62.4 1.0e-286 982.6
HCH6g1716 . 2 997 Phospholipase D Gene Family (Wang group) AT3G16785 72.8 0.0e+00 1471.1
HCH10g0893 . 19 984 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1198.7
HCH6g1716 . 47 1120 Phospholipase D Gene Family (Wang group) AT3G05630 62.6 0.0e+00 1340.1
HCH10g0893 . 32 1108 Phospholipase D Gene Family (Wang group) AT3G05630 62.7 0.0e+00 1332.8
HCH4g1310 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1403.7
HCH6g0221 . 1 806 Phospholipase D Gene Family (Wang group) AT3G15730 76.4 0.0e+00 1356.3
HCH4g0435 . 4 837 Phospholipase D Gene Family (Wang group) AT3G15730 64.0 0.0e+00 1119.0
HCH4g1310 . 6 808 Phospholipase D Gene Family (Wang group) AT1G52570 82.0 0.0e+00 1410.6
HCH6g0221 . 1 806 Phospholipase D Gene Family (Wang group) AT1G52570 75.6 0.0e+00 1337.8
HCH4g0435 . 4 837 Phospholipase D Gene Family (Wang group) AT1G52570 63.8 0.0e+00 1122.8
HCH4g1310 . 73 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.8e-292 1001.1
HCH4g0435 . 79 837 Phospholipase D Gene Family (Wang group) AT5G25370 62.7 1.4e-291 998.8
HCH6g0221 . 71 806 Phospholipase D Gene Family (Wang group) AT5G25370 62.4 1.0e-286 982.6
HCH6g0115 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 59.2 5.0e-265 910.6
HCH13g1175 . 116 1091 Phospholipase D Gene Family (Wang group) AT2G42010 71.5 0.0e+00 1439.5
HCH6g0948 . 30 853 Phospholipase D Gene Family (Wang group) AT2G42010 70.6 0.0e+00 1271.1
HCH4g0820 . 3 845 Phospholipase D Gene Family (Wang group) AT2G42010 54.0 2.2e-272 935.6
HCH14g0686 . 8 853 Phospholipase D Gene Family (Wang group) AT2G42010 52.7 4.1e-263 904.8
HCH13g1175 . 324 1091 Phospholipase D Gene Family (Wang group) AT4G00240 79.4 0.0e+00 1265.8
HCH6g0948 . 80 853 Phospholipase D Gene Family (Wang group) AT4G00240 69.7 0.0e+00 1154.0
HCH4g0820 . 61 845 Phospholipase D Gene Family (Wang group) AT4G00240 56.3 6.7e-260 893.6
HCH14g0686 . 68 853 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 1.2e-248 856.3
HCH6g0948 . 5 853 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1235.3
HCH13g1175 . 244 1091 Phospholipase D Gene Family (Wang group) AT4G11850 69.8 0.0e+00 1234.6
HCH4g0820 . 12 845 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 4.2e-255 877.9
HCH14g0686 . 10 853 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 9.6e-252 866.7
HCH6g0948 . 12 638 Phospholipase D Gene Family (Wang group) AT4G11830 65.9 4.0e-255 877.5
HCH13g1175 . 250 876 Phospholipase D Gene Family (Wang group) AT4G11830 65.5 5.7e-249 857.1
HCH4g0820 . 4 631 Phospholipase D Gene Family (Wang group) AT4G11830 50.9 8.1e-179 624.0
HCH6g0948 . 7 853 Phospholipase D Gene Family (Wang group) AT4G11840 65.6 0.0e+00 1174.1
HCH13g1175 . 244 1091 Phospholipase D Gene Family (Wang group) AT4G11840 66.1 0.0e+00 1164.4
HCH4g0820 . 4 845 Phospholipase D Gene Family (Wang group) AT4G11840 51.4 2.2e-248 855.5
HCH14g0686 . 10 843 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 4.2e-244 841.3
HCH14g0686 . 1 690 Phospholipase D Gene Family (Wang group) AT4G35790 69.6 3.9e-296 1013.8
HCH4g0820 . 6 674 Phospholipase D Gene Family (Wang group) AT4G35790 65.4 4.1e-277 950.7
HCH13g1175 . 269 920 Phospholipase D Gene Family (Wang group) AT4G35790 50.4 4.6e-196 681.4
HCH6g1716 . 2 997 Phospholipase D Gene Family (Wang group) AT3G16785 72.8 0.0e+00 1471.1
HCH10g0893 . 19 984 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1198.7
HCH6g1716 . 47 1120 Phospholipase D Gene Family (Wang group) AT3G05630 62.6 0.0e+00 1340.1
HCH10g0893 . 32 1108 Phospholipase D Gene Family (Wang group) AT3G05630 62.7 0.0e+00 1332.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012312 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29