Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0117 | ATGAGTTGTGAGCAGAAGAGGGGAAAGCAGGACAAAGGTTCTGATGATGTCAAGAAGGTGATTGTTGCAGTTAAAGCTTCTAAAGAAATTCCAAAGACAGCTCTTGTTTGGGCTTTGACTCATGTTGTTCAGCTTGGAGATTGCATTACTCTCCTTGTTGTTGTCCCTTCTCAAACTTCTGGTAGAAAATTTTGGGGATTTCCGAGATTTGCCGGGGACTGCGCTAGTGGTCACAAGAAAGCTCACTCTGGAACAAGCTCAGATCAGAAATTTGATATTACTGATACATGTTCCCAGATGATCCTTCAGCTTCATGATGTCTATGATCCAAATAAGATAAATGTTAAAATTAAAATCGTTTCCGGATCTCCCAGCGGGGCTGTAGCTGCGGAGGCTAAGAGAGCTCACGCCAGTTGGGTTGTACTAGACAAACAACTCAAACACGAGGAGAAATGTTGTATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAGCGATCGCAGCCAAAAGTTCTTCGCTTGAATTTGGTTGGATCACCTAAGAAGGAACCAGGAATGCCCTCTCCAGTACCTTCTGATGTAGATGAAGGGTCTGTAAACCATCAAAAAGAAAATAACGATTCTCTGGATTTTATTCGCGGACCAGTAGTGACTCCGAATAGTAGTCCAGAGCTGGGTACACCTTTTACTGCCACCGAAGCTGGAACATCATCGGTATCAAGCTCGGATCCTGGAACTTCACCATTTTTCAACTCTGAAATGAATGGAGACGTAAAGAAAGAAGAATTGTTTGTTATAAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGACTCAGATAGTGAAAATTTATCTGTATCTTCAGCAAGTTTGAGATTCCAACCATGGATGACAGAGTTTCTAAGTTCTCATCTTCAAACTTCACATCACCTAAGCGGAAGGTCACAGAGATTTGATGATGGGAATCAAGCGTCCACAAGAAAAGGTTTTCTACCAAAGTCCACAAAACTTGATAGAGATTCTGGGACTGGAATGTCAAGCCATAGAAATGACAAGGACTTTCATGGAGATGTAAGGGATGTAGTTTCACTCTCCAGGAACACGCCCCCGGGACCCCCTCCATTGTGTTCAATATGTCAACACAAGGCACCAATTTTTGGAAAACCTCCAAGGTGGTTCAACTATGCTGAGCTGGAGCTTGCTACTGGTGGATTTTCACAAGCCAACTTCTTGGCAGAGGGAGGCTATGGATCTGTTCACAGAGGGGTACTACCGGATGGACAGGTCGTTGCTGTCAAGCAGCACAAATTAGCTAGTTCTCAGGGAGATCTTGAATTTTGTTCAGAAGTTGAAGTTCTTAGCTGTGCTCAGCATCGAAATGTTGTGATGTTGATCGGTTTCTGTATAGAGGAGAAAAGAAGGCTACTAGTTTATGAATATATCTGCAATGGTTCATTGGATTCTCATCTATATGGACGCCAACAAGAGCCATTGGAATGGTCTGCACGGCAAAAAATAGCTGTTGGAGCTGCAAGAGGTCTACGATATCTCCATGAAGAATGTAGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCTAACAACATTCTTATCACGCATGATTTTGAACCACTGGTTGGAGATTTCGGCCTTGCAAGGTGGCAGCCTGATGGAGATACAGGCGTGGAAACAAGAGTTATCGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGTCAAATCACTGAAAAAGCCGATGTTTATTCCTTTGGGGTTGTACTGGTGGAGCTAATTACTGGAAGAAAAGCCGTGGACCTCAATCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCGCGTCCGTTATTGGATGAATTTCTCATTGATGAACTGATGGATCCAAGGTTGGGTAATAGCTATGCAGAGCATGAAGTCTACTGCATGTTGCACGCTGCATCTTTATGCATCCGAAGGGATCCTAATGCGAGGCCTCGTATGTCACAGGTTTTACGGATTCTCGAGGGTGACTTGGTTATGGATGCTAATTACTTGTCAACTCCCGGATATGATGTGGGAAGCCGGAGTGGTCGAATATGGACCGAGCAGCAGCAGCAACAACAAGAGTACAGTGGTTCCTTATCAGATGAGACCTTAGAGAGGTTCAACGAAAAGGTATCTCTTGAAAGTTTAAGATCCAACTACTGGGAAAGAGACAAGACAAGAAGGATTTCAAGTGGAAGTGATTTGTAA | 2256 | 43.79 | MSCEQKRGKQDKGSDDVKKVIVAVKASKEIPKTALVWALTHVVQLGDCITLLVVVPSQTSGRKFWGFPRFAGDCASGHKKAHSGTSSDQKFDITDTCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAHASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEPGMPSPVPSDVDEGSVNHQKENNDSLDFIRGPVVTPNSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDVKKEELFVIKENKELDAASSDSDSENLSVSSASLRFQPWMTEFLSSHLQTSHHLSGRSQRFDDGNQASTRKGFLPKSTKLDRDSGTGMSSHRNDKDFHGDVRDVVSLSRNTPPGPPPLCSICQHKAPIFGKPPRWFNYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLNRPKGQQCLTEWARPLLDEFLIDELMDPRLGNSYAEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYLSTPGYDVGSRSGRIWTEQQQQQQEYSGSLSDETLERFNEKVSLESLRSNYWERDKTRRISSGSDL | 751 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1465601 | 1469499 | - | evm.model.ptg000003l.1675 | HCH6g0117 | 545611 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0117 | 751 | PANTHER | OS01G0750732 PROTEIN | 138 | 696 | IPR050885 | - | |
HCH6g0117 | 751 | CDD | STKc_IRAK | 411 | 677 | - | - | |
HCH6g0117 | 751 | Pfam | Protein tyrosine and serine/threonine kinase | 409 | 674 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0117 | 751 | MobiDBLite | consensus disorder prediction | 308 | 356 | - | - | |
HCH6g0117 | 751 | MobiDBLite | consensus disorder prediction | 342 | 356 | - | - | |
HCH6g0117 | 751 | SUPERFAMILY | Protein kinase-like (PK-like) | 389 | 686 | IPR011009 | - | |
HCH6g0117 | 751 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 377 | 480 | - | - | |
HCH6g0117 | 751 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 526 | 538 | IPR008266 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0117 | 751 | Gene3D | HUPs | 4 | 151 | IPR014729 | - | |
HCH6g0117 | 751 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 481 | 684 | - | - | |
HCH6g0117 | 751 | FunFam | Dual-specific kinase DSK1-like | 11 | 165 | - | - | |
HCH6g0117 | 751 | Gene3D | Transferase(Phosphotransferase) domain 1 | 481 | 685 | - | - | |
HCH6g0117 | 751 | Gene3D | Phosphorylase Kinase; domain 1 | 377 | 480 | - | - | |
HCH6g0117 | 751 | ProSiteProfiles | Protein kinase domain profile. | 405 | 686 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0117 | 751 | MobiDBLite | consensus disorder prediction | 308 | 330 | - | - | |
HCH6g0117 | 751 | MobiDBLite | consensus disorder prediction | 177 | 254 | - | - | |
HCH6g0117 | 751 | MobiDBLite | consensus disorder prediction | 220 | 253 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0578 | HCH-Chr1:54660369 | HCH6g0117 | HCH-Chr6:1465601 | 3.20E-79 | dispersed | |
HCH1g0584 | HCH-Chr1:54731133 | HCH6g0117 | HCH-Chr6:1465601 | 4.30E-79 | dispersed | |
HCH6g0117 | HCH-Chr6:1465601 | HCH8g0750 | HCH-Chr8:44129632 | 4.70E-85 | dispersed | |
HCH12g0233 | HCH-Chr12:1294852 | HCH6g0117 | HCH-Chr6:1465601 | 2.80E-159 | transposed | |
HCH13g0162 | HCH-Chr13:1055981 | HCH6g0117 | HCH-Chr6:1465601 | 8.90E-68 | transposed | |
HCH13g0182 | HCH-Chr13:1228778 | HCH6g0117 | HCH-Chr6:1465601 | 2.10E-88 | transposed | |
HCH2g0294 | HCH-Chr2:42050715 | HCH6g0117 | HCH-Chr6:1465601 | 1.00E-68 | transposed | |
HCH6g0117 | HCH-Chr6:1465601 | HCH8g0661 | HCH-Chr8:43383304 | 9.10E-222 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81538 | PF07714 | PK_Tyr_Ser-Thr | 6.30E-41 | CL0016 | HCH | PK |
Pathway information
