Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0117 ATGAGTTGTGAGCAGAAGAGGGGAAAGCAGGACAAAGGTTCTGATGATGTCAAGAAGGTGATTGTTGCAGTTAAAGCTTCTAAAGAAATTCCAAAGACAGCTCTTGTTTGGGCTTTGACTCATGTTGTTCAGCTTGGAGATTGCATTACTCTCCTTGTTGTTGTCCCTTCTCAAACTTCTGGTAGAAAATTTTGGGGATTTCCGAGATTTGCCGGGGACTGCGCTAGTGGTCACAAGAAAGCTCACTCTGGAACAAGCTCAGATCAGAAATTTGATATTACTGATACATGTTCCCAGATGATCCTTCAGCTTCATGATGTCTATGATCCAAATAAGATAAATGTTAAAATTAAAATCGTTTCCGGATCTCCCAGCGGGGCTGTAGCTGCGGAGGCTAAGAGAGCTCACGCCAGTTGGGTTGTACTAGACAAACAACTCAAACACGAGGAGAAATGTTGTATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAGCGATCGCAGCCAAAAGTTCTTCGCTTGAATTTGGTTGGATCACCTAAGAAGGAACCAGGAATGCCCTCTCCAGTACCTTCTGATGTAGATGAAGGGTCTGTAAACCATCAAAAAGAAAATAACGATTCTCTGGATTTTATTCGCGGACCAGTAGTGACTCCGAATAGTAGTCCAGAGCTGGGTACACCTTTTACTGCCACCGAAGCTGGAACATCATCGGTATCAAGCTCGGATCCTGGAACTTCACCATTTTTCAACTCTGAAATGAATGGAGACGTAAAGAAAGAAGAATTGTTTGTTATAAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGACTCAGATAGTGAAAATTTATCTGTATCTTCAGCAAGTTTGAGATTCCAACCATGGATGACAGAGTTTCTAAGTTCTCATCTTCAAACTTCACATCACCTAAGCGGAAGGTCACAGAGATTTGATGATGGGAATCAAGCGTCCACAAGAAAAGGTTTTCTACCAAAGTCCACAAAACTTGATAGAGATTCTGGGACTGGAATGTCAAGCCATAGAAATGACAAGGACTTTCATGGAGATGTAAGGGATGTAGTTTCACTCTCCAGGAACACGCCCCCGGGACCCCCTCCATTGTGTTCAATATGTCAACACAAGGCACCAATTTTTGGAAAACCTCCAAGGTGGTTCAACTATGCTGAGCTGGAGCTTGCTACTGGTGGATTTTCACAAGCCAACTTCTTGGCAGAGGGAGGCTATGGATCTGTTCACAGAGGGGTACTACCGGATGGACAGGTCGTTGCTGTCAAGCAGCACAAATTAGCTAGTTCTCAGGGAGATCTTGAATTTTGTTCAGAAGTTGAAGTTCTTAGCTGTGCTCAGCATCGAAATGTTGTGATGTTGATCGGTTTCTGTATAGAGGAGAAAAGAAGGCTACTAGTTTATGAATATATCTGCAATGGTTCATTGGATTCTCATCTATATGGACGCCAACAAGAGCCATTGGAATGGTCTGCACGGCAAAAAATAGCTGTTGGAGCTGCAAGAGGTCTACGATATCTCCATGAAGAATGTAGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCTAACAACATTCTTATCACGCATGATTTTGAACCACTGGTTGGAGATTTCGGCCTTGCAAGGTGGCAGCCTGATGGAGATACAGGCGTGGAAACAAGAGTTATCGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGTCAAATCACTGAAAAAGCCGATGTTTATTCCTTTGGGGTTGTACTGGTGGAGCTAATTACTGGAAGAAAAGCCGTGGACCTCAATCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCGCGTCCGTTATTGGATGAATTTCTCATTGATGAACTGATGGATCCAAGGTTGGGTAATAGCTATGCAGAGCATGAAGTCTACTGCATGTTGCACGCTGCATCTTTATGCATCCGAAGGGATCCTAATGCGAGGCCTCGTATGTCACAGGTTTTACGGATTCTCGAGGGTGACTTGGTTATGGATGCTAATTACTTGTCAACTCCCGGATATGATGTGGGAAGCCGGAGTGGTCGAATATGGACCGAGCAGCAGCAGCAACAACAAGAGTACAGTGGTTCCTTATCAGATGAGACCTTAGAGAGGTTCAACGAAAAGGTATCTCTTGAAAGTTTAAGATCCAACTACTGGGAAAGAGACAAGACAAGAAGGATTTCAAGTGGAAGTGATTTGTAA 2256 43.79 MSCEQKRGKQDKGSDDVKKVIVAVKASKEIPKTALVWALTHVVQLGDCITLLVVVPSQTSGRKFWGFPRFAGDCASGHKKAHSGTSSDQKFDITDTCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAHASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEPGMPSPVPSDVDEGSVNHQKENNDSLDFIRGPVVTPNSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDVKKEELFVIKENKELDAASSDSDSENLSVSSASLRFQPWMTEFLSSHLQTSHHLSGRSQRFDDGNQASTRKGFLPKSTKLDRDSGTGMSSHRNDKDFHGDVRDVVSLSRNTPPGPPPLCSICQHKAPIFGKPPRWFNYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLNRPKGQQCLTEWARPLLDEFLIDELMDPRLGNSYAEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYLSTPGYDVGSRSGRIWTEQQQQQQEYSGSLSDETLERFNEKVSLESLRSNYWERDKTRRISSGSDL 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1465601 1469499 - evm.model.ptg000003l.1675 HCH6g0117 545611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0117 751 PANTHER OS01G0750732 PROTEIN 138 696 IPR050885 -
HCH6g0117 751 CDD STKc_IRAK 411 677 - -
HCH6g0117 751 Pfam Protein tyrosine and serine/threonine kinase 409 674 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0117 751 MobiDBLite consensus disorder prediction 308 356 - -
HCH6g0117 751 MobiDBLite consensus disorder prediction 342 356 - -
HCH6g0117 751 SUPERFAMILY Protein kinase-like (PK-like) 389 686 IPR011009 -
HCH6g0117 751 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 377 480 - -
HCH6g0117 751 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0117 751 Gene3D HUPs 4 151 IPR014729 -
HCH6g0117 751 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 481 684 - -
HCH6g0117 751 FunFam Dual-specific kinase DSK1-like 11 165 - -
HCH6g0117 751 Gene3D Transferase(Phosphotransferase) domain 1 481 685 - -
HCH6g0117 751 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
HCH6g0117 751 ProSiteProfiles Protein kinase domain profile. 405 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0117 751 MobiDBLite consensus disorder prediction 308 330 - -
HCH6g0117 751 MobiDBLite consensus disorder prediction 177 254 - -
HCH6g0117 751 MobiDBLite consensus disorder prediction 220 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0578 HCH-Chr1:54660369 HCH6g0117 HCH-Chr6:1465601 3.20E-79 dispersed
HCH1g0584 HCH-Chr1:54731133 HCH6g0117 HCH-Chr6:1465601 4.30E-79 dispersed
HCH6g0117 HCH-Chr6:1465601 HCH8g0750 HCH-Chr8:44129632 4.70E-85 dispersed
HCH12g0233 HCH-Chr12:1294852 HCH6g0117 HCH-Chr6:1465601 2.80E-159 transposed
HCH13g0162 HCH-Chr13:1055981 HCH6g0117 HCH-Chr6:1465601 8.90E-68 transposed
HCH13g0182 HCH-Chr13:1228778 HCH6g0117 HCH-Chr6:1465601 2.10E-88 transposed
HCH2g0294 HCH-Chr2:42050715 HCH6g0117 HCH-Chr6:1465601 1.00E-68 transposed
HCH6g0117 HCH-Chr6:1465601 HCH8g0661 HCH-Chr8:43383304 9.10E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81538 PF07714 PK_Tyr_Ser-Thr 6.30E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0117 - - - 0.0