Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0134 ATGGCAATCCTCAACATCTTCCTCCTCTCTCTTCTCTCATCTTTCTCTCTCTTCCATTTAATTTCCAGCCAAAATCCATCAGGTTTCATCAGTATAGACTGCGGACTTCCTGCAAACTCGAGCTACACCGAACCGACGACCGGGATCATTTACGAGTCCGATGCAGCGTTCATAACGACCGGAACAGTGCACAACATAACATCGGACAGCATAAAAAAGGGTCTAGATGAACAGTTATGGAGTTTAAGAAGCTTTCCAGAAGGGATCAGAAACTGCTACAAAATAAACGTGAGAGCCGGCACCAAGTATTTGATCCGAGCCAGTTTCAAGTACGGGAATTACGACGGCCGGAGAAACTTACCGACGTTCGATTTGCATTTCGGAGCTAATTTCTGGGACACAGTAAATTTCGAAGGAGATTTCAATGTTCATAAAGAGATGATACATATAGTTTCTTCAAGTACAATAGAGATTTGTGTAGTGAATATTGGAACTGGGATTCCGTTTATTTCAGCTTTGGAATTGAGGCCTTTCAGAAATATCACTTATGAAACGGGATCGCTCACGCTGGCTACTTTCCTGCGTCTTGATTATGGCTCTTTTAACAATCAAATTTACAGGTATAAGCACGACACCTATGATCGAATATGGGATGCACCAGTTCCCATTGATGGATGGATTCCGACAAACACATCAGAAGAAGTAAACGTAAACGACAATCTTTTCTTACAACCGGCGGCGGTGGTGATGAACACGGCGGCGACTTACATTAACACAACAACTCCGATGGAATTCGAATGGCAGGCGCCTGATCGGGAGACCAAGTTTTTCGCCTACATGTATTTTGCAGAGCTGAAAAATCTAACAGCCAATGAAACGAGAGAATTCAATATATTATTGAATGGGAAAAAATGGTTAAATTCATCCGTTAAACCGAGTTTCTTGTCTGAGTTAGCTGTTTTCAGTACCTCTCCTATCAATGCCGAAGCGTATGTTTTTTCTCTCGTCAAAACTGAGAATTCAACGCTTCCTCCTATCCTCAATGCTCTTGAAATTTATAGTGTTCTAGATCTTCCCCAACAGCAGACTAATGAAGAAGATGTTGAGGGCATTGGAAATGTTAAGGCAAGCTATGGAATTAAAAGAAATTGGCAAGGAGATCCATGTGCCCCTATACAATTTATTTGGCAAGGAGTTAATTGTAGCTTTGTTGGTTCTCAGCCTCCTAGAATCATATCCTTGGATTTGTCCTCCAATGGACTGAAAGGGGTAATAGCTCAAGATATAGCAAATCTTAAAATGCTAGAGACTTTGGATTTATCAAACAATAATTTAAGTGGACCGGTGCCCGATTTTCTCGCTCAATTGCCATCGTTGCGGTTTCTAAACTTGGAAAGAAACAACCTTTCAGGACTACTTCCGGCGCAACTGATAGAAAAGTCCAGGAGCGGTTCTCTATCATTAAGATTTGGCGAAAATCCGAATCTGGTTGGTAGTAGTCCAAGTGAAAAGAAGGCACGCAATGTCGTTGTTCCTGTAGTAGCATCAATTGGTGGATTTCTTCTGCTTGTGTTAATGATAGCTGCTGCTTTTTTTTGGATGACTAAAAGAAGAAAACAGAGAGGTGCTCTATTTGGAGCGGAGAAAAATGATGGCCATTCTCAACCATGGGAGACGACTAAGCAACATTATTCATACTCGGATATTCTAAGAATTACAAACAATTTTGAGAGACTGCTCGGCGAAGGGGGCTTTGGAAGAGTTTACTATGGTCGTATTGATAACATCGAAGTAGCCATAAAGATGTTATCTCCTCGATCGGTTCAAGGGTATCAACAATTTCAGGCAGAGGTTGACCTTCTTACGAGAGTTCATCATCGAAACTTGACCGGTCTTGTCGGATATTGTAATGAAGCAACAAATAAAGGACTCATTTATGAATACATGGGAGGAGGAAACTTAGGATCTCTCATGTCAGATGGCAAGTCAGATTTGTTGAACTGGGAAGATAGACTTCGTATAGCAGTCGATGCAGCACACGGATTGGAGTATTTGCATAGTGGTATCAAGCCAGGTATAGTACATAGAGATGTAAAAACTACCAACATCTTATTGGATGACAATCTTCGAGCTAAAGTATCCGATTTTGGCTTGTCGAGAATTTTCCCGACTGATGGTGGTGCTACTCATGTGACAACCAATGTTGTTGGCACTCCTGGCTACCTTGACCCAGAATACTACACATCTTACAGGTTAAATGAGAAAAGCGATGTTTATAGCTTCGGAATTGTTATTCTAGAAATCGTAACTGGAAAACCAGTTTTGACAAAGACTCAAGATAAGATAACTCACATCTACCAATTGGTTGACTCATTGCTTTCAGAAGGTGATATCAGCTCTATTATTGATCCCAAAATGAAAAAAGATTTCGATGTAAACTCGATTTGGAAAGCGGTCGAAATAGCAATGTCTTGTGCATCTCACACCTCTTCAAATAGGCCAACCATGAGCCAAGTTGTGGTAGCATTGAATGAGTGTTTAGCTATGGAATCAGCTCACAGCAATGATCATCAACTTGAATCTGAAACAATGCCTACAGTTGTAGATTCCATTTCTCTATTTGGCCCTACGGCAAGGTAG 2640 41.06 MAILNIFLLSLLSSFSLFHLISSQNPSGFISIDCGLPANSSYTEPTTGIIYESDAAFITTGTVHNITSDSIKKGLDEQLWSLRSFPEGIRNCYKINVRAGTKYLIRASFKYGNYDGRRNLPTFDLHFGANFWDTVNFEGDFNVHKEMIHIVSSSTIEICVVNIGTGIPFISALELRPFRNITYETGSLTLATFLRLDYGSFNNQIYRYKHDTYDRIWDAPVPIDGWIPTNTSEEVNVNDNLFLQPAAVVMNTAATYINTTTPMEFEWQAPDRETKFFAYMYFAELKNLTANETREFNILLNGKKWLNSSVKPSFLSELAVFSTSPINAEAYVFSLVKTENSTLPPILNALEIYSVLDLPQQQTNEEDVEGIGNVKASYGIKRNWQGDPCAPIQFIWQGVNCSFVGSQPPRIISLDLSSNGLKGVIAQDIANLKMLETLDLSNNNLSGPVPDFLAQLPSLRFLNLERNNLSGLLPAQLIEKSRSGSLSLRFGENPNLVGSSPSEKKARNVVVPVVASIGGFLLLVLMIAAAFFWMTKRRKQRGALFGAEKNDGHSQPWETTKQHYSYSDILRITNNFERLLGEGGFGRVYYGRIDNIEVAIKMLSPRSVQGYQQFQAEVDLLTRVHHRNLTGLVGYCNEATNKGLIYEYMGGGNLGSLMSDGKSDLLNWEDRLRIAVDAAHGLEYLHSGIKPGIVHRDVKTTNILLDDNLRAKVSDFGLSRIFPTDGGATHVTTNVVGTPGYLDPEYYTSYRLNEKSDVYSFGIVILEIVTGKPVLTKTQDKITHIYQLVDSLLSEGDISSIIDPKMKKDFDVNSIWKAVEIAMSCASHTSSNRPTMSQVVVALNECLAMESAHSNDHQLESETMPTVVDSISLFGPTAR 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1813074 1818261 - evm.model.ptg000003l.1658 HCH6g0134 545628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0134 879 PRINTS Leucine-rich repeat signature 411 424 - -
HCH6g0134 879 PRINTS Leucine-rich repeat signature 432 445 - -
HCH6g0134 879 Pfam Malectin-like domain 32 355 IPR024788 -
HCH6g0134 879 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 649 856 - -
HCH6g0134 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0134 879 SUPERFAMILY Protein kinase-like (PK-like) 554 843 IPR011009 -
HCH6g0134 879 Pfam Protein tyrosine and serine/threonine kinase 576 842 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0134 879 SUPERFAMILY L domain-like 396 477 - -
HCH6g0134 879 SMART serkin_6 574 847 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0134 879 FunFam Leucine-rich repeat receptor-like kinase 367 499 - -
HCH6g0134 879 Gene3D Ribonuclease Inhibitor 367 487 IPR032675 -
HCH6g0134 879 Pfam Leucine rich repeat 413 469 IPR001611 GO:0005515(InterPro)
HCH6g0134 879 FunFam Leucine-rich repeat receptor-like protein kinase 552 648 - -
HCH6g0134 879 ProSitePatterns Protein kinases ATP-binding region signature. 580 601 IPR017441 GO:0005524(InterPro)
HCH6g0134 879 PANTHER OS07G0107800 PROTEIN-RELATED 23 852 - -
HCH6g0134 879 Gene3D Phosphorylase Kinase; domain 1 547 648 - -
HCH6g0134 879 Gene3D Transferase(Phosphotransferase) domain 1 649 870 - -
HCH6g0134 879 ProSiteProfiles Protein kinase domain profile. 574 847 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1457 HCH-Chr4:10862705 HCH6g0134 HCH-Chr6:1813074 6.40E-203 dispersed
HCH6g0134 HCH-Chr6:1813074 HCH6g0137 HCH-Chr6:1847272 1.20E-244 dispersed
HCH6g0133 HCH-Chr6:1754494 HCH6g0134 HCH-Chr6:1813074 1.80E-198 tandem
HCH6g0134 HCH-Chr6:1813074 HCH6g0135 HCH-Chr6:1821728 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81543 PF12819 Malectin_like 1.40E-106 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0134 - - - 0.0