Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0135 ATGGCGACCCTCATCATCATCATCATCGTTCTCCTCTTCTTTCTTTCTTCTTCCTCTCTTTTAATTCTAGTTTCCGGTCAAAACCCTTCAGGTTTTATCAGTTTAGACTGCGGACTTCCAGCAAACTCTAGCTACACAGAACCCGCCACCGGCATAGTCTACGACTCAGATGCACCCTTCGTAACCACCGGCACCGTCCACAACATATCCGTTGATCACATAAAATCCACTCTAAAACAACAGCTATTTAGTCTAAGAAGCTTTCCTGAAGGAACCAGAAACTGCTACAAATTGAAAGTGAAATCAGGAACCAAGTATCTGATTCGAGCAAGTTTTTTGTATGGAGATTATGATGGCGAAAAAAGATTGCCGGAGTTCGATTTGCATTTTGGAGCTAATTTCTGGGATTCCATAGCTTTTAATGAAATCGATCTTACTGTTCATAAGGAGATTATTGAGATAGTTTCTTCAAGAAATTTAGAGGTTTGTTTAGTGAATACTGGGTCAGGGACGCCATTTATTTCAGCTTTGGAGTTGAGGCCTCTTAGAAACTCCAGTTATGATACGAGATCTCGGTCTCTTGCTACCTTTTTACGTCTGGATGTGGGTTCTATTAATAATCAAACTTACAGGTACAAGGATGATGTTTATGATCGTATCTGGGTTCCAATGGTTCAATTAAATGGATGGACTTCCATAAGCACATCAGAACAAGTAGACGTAAACGATTCACTCTTCTTCCAACCGTCTCCGGCGGTCATGAACACGGCGGGAAAAATGATAAACGAAACGGCTCCGATGGAATTCAACTGGAATCCACCGGACACCACCACGAGTTTCTTCATCTATATGTACTTCGCTGAAATCCAAAAGCTTCAGGCTAACGAATCAAGATCCTTTGACATATTCCTCAATGGAAAACCATGGTATAATTCATCTTTTTCCCCTATATATCTCATTGAGTCAGTAGTCTACAGTACCCTTCCGGTCACTGGTGGAAATTACGATTTCTCCATCGTCAAATCTCCGAATTCGACACTTCCTCCGATCCTCAACGCCATTGAGATTTATAGGGTTATAGATTTTCGACTTTCCAAGACAAACGAGGAAGACGTTGAGAGTATTGAAAGAATGAAGGGAAAATATGGAGTAAGAAGAAATTGGCAGGGAGATCCATGTGGCCCAAGAGAGTTAATTTGGCAAGGAGTTAATTGTAGTTTTCTTGATTCTCAGCCTCCTAGAATTACTTCTTTGAATTTATCCTCCAATGGACTGACAGGGGAAATATCTCAAGATATTGAAAATCTGAAAATGCTGGAGACTTTAGATTTATCAAACAATAACTTAAGTGGAGCAGTGCCTGATTTTCTCACTCAATTGCAATCATTGAGGGTCTTAAACTTGGAAAGAAACAACCTCTCAGGACTCATTCCTTCCCAATTGATTGAAAAATCCAAGAGTGGTTCTCTGTCTTTAAGGTTTGGCCAAAATCCAAACCTCTTTACCACCACAGCTCCAAGTGAAAAGAAGAAAAGCAACATTGTTGCCCCTGTTCTGGCATCAGTTGGAGGATTTGCTCTGCTCTTGTTATCAATTGTAGGTGCTATCTTTTGGATCAAGAATAAACAGAGAAAACAACATGATGAGATTGCTCGATTTGGAAAAACGAAACAAAATGACAATCAATCTCAACGATGGGAAGTGAATAAGAAAAATTATTCATACAACGAAATCTTACGAATTACAAACAATTTTGAGCGGTTGCTCGGAGAAGGTGGATTTGGAATGGTTTACTATGGCCGCATTGAAAACACTGAAGTAGCGATAAAGATGTTATCCCCTCAGTCAACTCAAGGGTATCAACAATTTCAAGCAGAGGTTGACCTTCTTATGAGGGTTCATCATAGAAACTTGACTGGCCTTGTTGGGTATTGTAATGAAGCAACCAACAAAGGACTCATTTATGAATACATGGGAAGAGGAAACCTAGGATCTCTCATTTCAGGTGGCAGATCATATTTGTTGAATTGGGAAGATAGGCTTCATATAGCATTGGATGCAGCACATGGATTGGAGTACCTACATAATGGTATTAAACCAGCAATAATACATCGAGATGTAAAATCTACAAACATCTTATTGGACGACAATCTTCGAGCCAAAGTAGCCGATTTCGGCTTGTCTAGAGTTCTTCCAACGGATGGTGCTGCGACTCATGTGACGACCAATATCGTCGGGACTCATGGTTATCTCGATCCTGAGTACTACTTATCTTCCAGGTTGAATGAGAAAAGTGATGTTTATGCATTTGGAGTAATTCTTCTGGAACTCATAACTGGGAAACCAGCTTTGATGCAGACTCAAGATACGATAAATCATGTCTACGAATGGGTTGAGCCCTTACTTTCTCAAGGCGATATTCGATCAATTATCGACCCGAGAATGAAAGAAGATTTCGACATAAACACAATTTGGAAAGCAGTTGATATAGCAATGTCATGTTCATCTTTTAACTCAGCAAGTAGGCCAAACATGAGCCAAGTGGTGGCAGATTTGAATGAATGTTTGGCTATGGAATTTGATCGTAATAAGGAACATGAACCAGAAACACAAGTTGCAGATTCCACTTCTCTATTTGGTCCCTCAGCAAGGTAG 2655 40.11 MATLIIIIIVLLFFLSSSSLLILVSGQNPSGFISLDCGLPANSSYTEPATGIVYDSDAPFVTTGTVHNISVDHIKSTLKQQLFSLRSFPEGTRNCYKLKVKSGTKYLIRASFLYGDYDGEKRLPEFDLHFGANFWDSIAFNEIDLTVHKEIIEIVSSRNLEVCLVNTGSGTPFISALELRPLRNSSYDTRSRSLATFLRLDVGSINNQTYRYKDDVYDRIWVPMVQLNGWTSISTSEQVDVNDSLFFQPSPAVMNTAGKMINETAPMEFNWNPPDTTTSFFIYMYFAEIQKLQANESRSFDIFLNGKPWYNSSFSPIYLIESVVYSTLPVTGGNYDFSIVKSPNSTLPPILNAIEIYRVIDFRLSKTNEEDVESIERMKGKYGVRRNWQGDPCGPRELIWQGVNCSFLDSQPPRITSLNLSSNGLTGEISQDIENLKMLETLDLSNNNLSGAVPDFLTQLQSLRVLNLERNNLSGLIPSQLIEKSKSGSLSLRFGQNPNLFTTTAPSEKKKSNIVAPVLASVGGFALLLLSIVGAIFWIKNKQRKQHDEIARFGKTKQNDNQSQRWEVNKKNYSYNEILRITNNFERLLGEGGFGMVYYGRIENTEVAIKMLSPQSTQGYQQFQAEVDLLMRVHHRNLTGLVGYCNEATNKGLIYEYMGRGNLGSLISGGRSYLLNWEDRLHIALDAAHGLEYLHNGIKPAIIHRDVKSTNILLDDNLRAKVADFGLSRVLPTDGAATHVTTNIVGTHGYLDPEYYLSSRLNEKSDVYAFGVILLELITGKPALMQTQDTINHVYEWVEPLLSQGDIRSIIDPRMKEDFDINTIWKAVDIAMSCSSFNSASRPNMSQVVADLNECLAMEFDRNKEHEPETQVADSTSLFGPSAR 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1821728 1827847 - evm.model.ptg000003l.1657 HCH6g0135 545629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0135 884 SMART serkin_6 583 856 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0135 884 ProSitePatterns Protein kinases ATP-binding region signature. 589 610 IPR017441 GO:0005524(InterPro)
HCH6g0135 884 Gene3D Phosphorylase Kinase; domain 1 555 657 - -
HCH6g0135 884 Pfam Malectin-like domain 35 359 IPR024788 -
HCH6g0135 884 PANTHER OS07G0107800 PROTEIN-RELATED 27 861 - -
HCH6g0135 884 Gene3D - 195 359 - -
HCH6g0135 884 MobiDBLite consensus disorder prediction 863 884 - -
HCH6g0135 884 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 658 865 - -
HCH6g0135 884 PRINTS Leucine-rich repeat signature 439 452 - -
HCH6g0135 884 PRINTS Leucine-rich repeat signature 460 473 - -
HCH6g0135 884 FunFam Leucine-rich repeat receptor-like kinase 371 503 - -
HCH6g0135 884 SUPERFAMILY Protein kinase-like (PK-like) 560 852 IPR011009 -
HCH6g0135 884 Gene3D Ribonuclease Inhibitor 373 491 IPR032675 -
HCH6g0135 884 Pfam Protein tyrosine and serine/threonine kinase 585 852 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0135 884 Pfam Leucine rich repeat 413 473 IPR001611 GO:0005515(InterPro)
HCH6g0135 884 ProSiteProfiles Protein kinase domain profile. 583 856 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0135 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0135 884 Gene3D Transferase(Phosphotransferase) domain 1 658 877 - -
HCH6g0135 884 SUPERFAMILY L domain-like 400 486 - -
HCH6g0135 884 FunFam Leucine-rich repeat receptor-like protein kinase 556 657 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1455 HCH-Chr4:10810160 HCH6g0135 HCH-Chr6:1821728 2.50E-90 dispersed
HCH4g1456 HCH-Chr4:10847580 HCH6g0135 HCH-Chr6:1821728 9.90E-215 dispersed
HCH4g1458 HCH-Chr4:10868372 HCH6g0135 HCH-Chr6:1821728 3.10E-61 dispersed
HCH5g0994 HCH-Chr5:9687707 HCH6g0135 HCH-Chr6:1821728 3.30E-93 dispersed
HCH6g0132 HCH-Chr6:1666251 HCH6g0135 HCH-Chr6:1821728 0.00E+00 dispersed
HCH6g0133 HCH-Chr6:1754494 HCH6g0135 HCH-Chr6:1821728 3.30E-203 dispersed
HCH6g0135 HCH-Chr6:1821728 HCH6g0137 HCH-Chr6:1847272 7.10E-258 dispersed
HCH6g0134 HCH-Chr6:1813074 HCH6g0135 HCH-Chr6:1821728 0.00E+00 tandem
HCH6g0135 HCH-Chr6:1821728 HCH6g0136 HCH-Chr6:1842128 5.90E-79 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81544 PF12819 Malectin_like 5.00E-112 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0135 - - - 0.0